When anaerobes encounter oxygen: mechanisms of oxygen toxicity, tolerance and defence

Z Lu, JA Imlay - Nature reviews microbiology, 2021 - nature.com
The defining trait of obligate anaerobes is that oxygen blocks their growth, yet the underlying
mechanisms are unclear. A popular hypothesis was that these microorganisms failed to …

Toxicity of metal oxide nanoparticles: mechanisms, characterization, and avoiding experimental artefacts

AB Djurišić, YH Leung, AMC Ng, XY Xu, PKH Lee… - Small, 2015 - Wiley Online Library
Metal oxide nanomaterials are widely used in practical applications and represent a class of
nanomaterials with the highest global annual production. Many of those, such as TiO2 and …

Shotgun metaproteomics of the human distal gut microbiota

NC Verberkmoes, AL Russell, M Shah… - The ISME …, 2009 - academic.oup.com
The human gut contains a dense, complex and diverse microbial community, comprising the
gut microbiome. Metagenomics has recently revealed the composition of genes in the gut …

Integrating multiple 'omics' analysis for microbial biology: application and methodologies

W Zhang, F Li, L Nie - Microbiology, 2010 - microbiologyresearch.org
Recent advances in various 'omics' technologies enable quantitative monitoring of the
abundance of various biological molecules in a high-throughput manner, and thus allow …

A post-genomic view of the ecophysiology, catabolism and biotechnological relevance of sulphate-reducing prokaryotes

R Rabus, SS Venceslau, L Wöhlbrand… - Advances in microbial …, 2015 - Elsevier
Dissimilatory sulphate reduction is the unifying and defining trait of sulphate-reducing
prokaryotes (SRP). In their predominant habitats, sulphate-rich marine sediments, SRP have …

Metabolic flexibility of sulfate-reducing bacteria

CM Plugge, W Zhang, JCM Scholten… - Frontiers in …, 2011 - frontiersin.org
Dissimilatory sulfate-reducing prokaryotes (SRB) are a very diverse group of anaerobic
bacteria that are omnipresent in nature and play an imperative role in the global cycling of …

The role of CRISPR-Cas systems in virulence of pathogenic bacteria

R Louwen, RHJ Staals, HP Endtz… - Microbiology and …, 2014 - Am Soc Microbiol
Clustered regularly interspaced short palindromic repeats (CRISPR) and CRISPR-
associated (Cas) genes are present in many bacterial and archaeal genomes. Since the …

An allosteric redox switch involved in oxygen protection in a CO2 reductase

AR Oliveira, C Mota, G Vilela-Alves, RR Manuel… - Nature Chemical …, 2024 - nature.com
Metal-dependent formate dehydrogenases reduce CO2 with high efficiency and selectivity,
but are usually very oxygen sensitive. An exception is Desulfovibrio vulgaris W/Sec-FdhAB …

Bacterial Oxidases of the Cytochrome bd Family: Redox Enzymes of Unique Structure, Function, and Utility As Drug Targets

VB Borisov, SA Siletsky, A Paiardini… - Antioxidants & redox …, 2021 - liebertpub.com
Significance: Cytochrome bd is a ubiquinol: oxygen oxidoreductase of many prokaryotic
respiratory chains with a unique structure and functional characteristics. Its primary role is to …

Systems biology approaches to bioremediation

V de Lorenzo - Current opinion in biotechnology, 2008 - Elsevier
Bioremediation involves the exposure of a whole mixture of chemical structures to an
intricate multispecies metabolic network present in a polluted scenario. The complexity …