A practical guide to amplicon and metagenomic analysis of microbiome data
Advances in high-throughput sequencing (HTS) have fostered rapid developments in the
field of microbiome research, and massive microbiome datasets are now being generated …
field of microbiome research, and massive microbiome datasets are now being generated …
Current challenges and best-practice protocols for microbiome analysis
Analyzing the microbiome of diverse species and environments using next-generation
sequencing techniques has significantly enhanced our understanding on metabolic …
sequencing techniques has significantly enhanced our understanding on metabolic …
The source of the Black Death in fourteenth-century central Eurasia
The origin of the medieval Black Death pandemic (ad 1346–1353) has been a topic of
continuous investigation because of the pandemic's extensive demographic impact and long …
continuous investigation because of the pandemic's extensive demographic impact and long …
Genomic diversity of severe acute respiratory syndrome–coronavirus 2 in patients with coronavirus disease 2019
Z Shen, Y **ao, L Kang, W Ma, L Shi… - Clinical infectious …, 2020 - academic.oup.com
Background A novel coronavirus (CoV), severe acute respiratory syndrome (SARS)–CoV-2,
has infected> 75 000 individuals and spread to> 20 countries. It is still unclear how fast the …
has infected> 75 000 individuals and spread to> 20 countries. It is still unclear how fast the …
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
Abstract The InterPro database (http://www. ebi. ac. uk/interpro/) classifies protein
sequences into families and predicts the presence of functionally important domains and …
sequences into families and predicts the presence of functionally important domains and …
Species-level functional profiling of metagenomes and metatranscriptomes
Functional profiles of microbial communities are typically generated using comprehensive
metagenomic or metatranscriptomic sequence read searches, which are time-consuming …
metagenomic or metatranscriptomic sequence read searches, which are time-consuming …
Best practices for analysing microbiomes
Complex microbial communities shape the dynamics of various environments, ranging from
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
Long-term nutrient inputs shift soil microbial functional profiles of phosphorus cycling in diverse agroecosystems
Microorganisms play an important role in soil phosphorus (P) cycling and regulation of P
availability in agroecosystems. However, the responses of the functional and ecological …
availability in agroecosystems. However, the responses of the functional and ecological …
[HTML][HTML] Airborne environmental DNA for terrestrial vertebrate community monitoring
Biodiversity monitoring at the community scale is a critical element of assessing and
studying species distributions, ecology, diversity, and movements, and it is key to …
studying species distributions, ecology, diversity, and movements, and it is key to …
InterPro in 2017—beyond protein family and domain annotations
Abstract InterPro (http://www. ebi. ac. uk/interpro/) is a freely available database used to
classify protein sequences into families and to predict the presence of important domains …
classify protein sequences into families and to predict the presence of important domains …