Principal Component Analyses (PCA)-based findings in population genetic studies are highly biased and must be reevaluated

E Elhaik - Scientific Reports, 2022 - nature.com
Abstract Principal Component Analysis (PCA) is a multivariate analysis that reduces the
complexity of datasets while preserving data covariance. The outcome can be visualized on …

A community-maintained standard library of population genetic models

JR Adrion, CB Cole, N Dukler, JG Galloway… - elife, 2020 - elifesciences.org
The explosion in population genomic data demands ever more complex modes of analysis,
and increasingly, these analyses depend on sophisticated simulations. Recent advances in …

The evolution of the pegasus workflow management software

E Deelman, K Vahi, M Rynge, R Mayani… - … in Science & …, 2019 - ieeexplore.ieee.org
Since 2001, the Pegasus Workflow Management System has evolved into a robust and
scalable system that automates the execution of a number of complex applications running …

Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation

T Sanchez, J Cury, G Charpiat… - Molecular Ecology …, 2021 - Wiley Online Library
For the past decades, simulation‐based likelihood‐free inference methods have enabled
researchers to address numerous population genetics problems. As the richness and …

Genome-wide data from medieval German Jews show that the Ashkenazi founder event pre-dated the 14th century

S Waldman, D Backenroth, É Harney, S Flohr, NC Neff… - Cell, 2022 - cell.com
We report genome-wide data from 33 Ashkenazi Jews (AJ), dated to the 14 th century,
obtained following a salvage excavation at the medieval Jewish cemetery of Erfurt …

Whole genomes from Angola and Mozambique inform about the origins and dispersals of major African migrations

S Tallman, MD Sungo, S Saranga, S Beleza - Nature Communications, 2023 - nature.com
As the continent of origin for our species, Africa harbours the highest levels of diversity
anywhere on Earth. However, many regions of Africa remain under-sampled genetically …

Reconstructing our past˸ deep learning for population genetics

T Sanchez - 2022 - theses.hal.science
Constant improvement of DNA sequencing technology that produces large quantities of
genetic data should greatly enhance our knowledge of evolution, particularly demographic …

[HTML][HTML] Middle eastern genetic legacy in the paternal and maternal gene pools of Chuetas

JF Ferragut, C Ramon, JA Castro, A Amorim… - Scientific Reports, 2020 - nature.com
Chuetas are a group of descendants of Majorcan Crypto-Jews (Balearic Islands, Spain) who
were socially stigmatized and segregated by their Majorcan neighbours until recently; …

Whole-genome sequencing of Bantu-speakers from Angola and Mozambique reveals complex dispersal patterns and interactions throughout sub-Saharan Africa

S Tallman, M das Dores Sungo, S Saranga, S Beleza - bioRxiv, 2022 - biorxiv.org
As the continent of origin for our species, Africa harbours the highest levels of diversity
anywhere on Earth. This trove of diversity provides rich opportunities to discover unknown …

[КНИГА][B] Ashkenazic Jews and the Biblical Israelites: The Early Demographic Development of East European Ashkenazis

J Straten - 2021 - books.google.com
Who were the early ancestors of East European Ashkenazic Jews, how were they related to
the biblical Israelites/Judeans, and when and from where did they arrive in Eastern Europe …