Deep learning in drug discovery: an integrative review and future challenges

H Askr, E Elgeldawi, H Aboul Ella… - Artificial Intelligence …, 2023 - Springer
Recently, using artificial intelligence (AI) in drug discovery has received much attention
since it significantly shortens the time and cost of develo** new drugs. Deep learning (DL) …

Network pharmacology approach for medicinal plants: review and assessment

F Noor, M Tahir ul Qamar, UA Ashfaq, A Albutti… - Pharmaceuticals, 2022 - mdpi.com
Natural products have played a critical role in medicine due to their ability to bind and
modulate cellular targets involved in disease. Medicinal plants hold a variety of bioactive …

Network pharmacology databases for traditional Chinese medicine: review and assessment

R Zhang, X Zhu, H Bai, K Ning - Frontiers in pharmacology, 2019 - frontiersin.org
The research field of systems biology has greatly advanced and, as a result, the concept of
network pharmacology has been developed. This advancement, in turn, has shifted the …

Applications of network pharmacology in traditional Chinese medicine research

Z Zhou, B Chen, S Chen, M Lin, Y Chen… - Evidence‐Based …, 2020 - Wiley Online Library
Human diseases, especially infectious ones, have been evolving constantly. However, their
treatment strategies are not develo** quickly. Some diseases are caused by a variety of …

Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review

P Csermely, T Korcsmáros, HJM Kiss, G London… - Pharmacology & …, 2013 - Elsevier
Despite considerable progress in genome-and proteome-based high-throughput screening
methods and in rational drug design, the increase in approved drugs in the past decade did …

HIPPIE: Integrating protein interaction networks with experiment based quality scores

MH Schaefer, JF Fontaine, A Vinayagam, P Porras… - PloS one, 2012 - journals.plos.org
Protein function is often modulated by protein-protein interactions (PPIs) and therefore
defining the partners of a protein helps to understand its activity. PPIs can be detected …

Developments in toxicogenomics: understanding and predicting compound-induced toxicity from gene expression data

B Alexander-Dann, LL Pruteanu, E Oerton… - Molecular omics, 2018 - pubs.rsc.org
The toxicogenomics field aims to understand and predict toxicity by using 'omics' data in
order to study systems-level responses to compound treatments. In recent years there has …

An extensive survey on the use of supervised machine learning techniques in the past two decades for prediction of drug side effects

P Das, DH Mazumder - Artificial intelligence review, 2023 - Springer
Approved drugs for sale must be effective and safe, implying that the drug's advantages
outweigh its known harmful side effects. Side effects (SE) of drugs are one of the common …

Network pharmacology: an efficient but underutilized approach in oral, head and neck cancer therapy—a review

P Muthuramalingam, R Jeyasri… - Frontiers in …, 2024 - frontiersin.org
The application of network pharmacology (NP) has advanced our understanding of the
complex molecular mechanisms underlying diseases, including neck, head, and oral …

iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence

B Turner, S Razick, AL Turinsky, J Vlasblom… - Database, 2010 - academic.oup.com
We present iRefWeb, a web interface to protein interaction data consolidated from 10 public
databases: BIND, BioGRID, CORUM, DIP, IntAct, HPRD, MINT, MPact, MPPI and OPHID …