Network-based in silico drug efficacy screening

E Guney, J Menche, M Vidal, AL Barábasi - Nature communications, 2016 - nature.com
The increasing cost of drug development together with a significant drop in the number of
new drug approvals raises the need for innovative approaches for target identification and …

[HTML][HTML] Underlying genetic architecture of resistance to mastitis in dairy cattle: A systematic review and gene prioritization analysis of genome-wide association …

SG Narayana, E de Jong, FS Schenkel… - Journal of Dairy …, 2023 - Elsevier
Mastitis, the most frequent disease in dairy cattle. Resistance to mastitis is a complex,
polygenic trait controlled by several genes, each with small effects. Genome-wide …

Computational approaches for prioritizing candidate disease genes based on PPI networks

W Lan, J Wang, M Li, W Peng… - Tsinghua Science and …, 2015 - ieeexplore.ieee.org
With the continuing development and improvement of genome-wide techniques, a great
number of candidate genes are discovered. How to identify the most likely disease genes …

Genome-wide association study to identify genomic regions and positional candidate genes associated with male fertility in beef cattle

H Sweett, PAS Fonseca, A Suárez-Vega, A Livernois… - Scientific reports, 2020 - nature.com
Fertility plays a key role in the success of calf production, but there is evidence that
reproductive efficiency in beef cattle has decreased during the past half-century worldwide …

Combined GWAS and 'guilt by association'-based prioritization analysis identifies functional candidate genes for body size in sheep

A Kominakis, AL Hager-Theodorides, E Zoidis… - Genetics Selection …, 2017 - Springer
Background Body size in sheep is an important indicator of productivity, growth and health
as well as of environmental adaptation. It is a composite quantitative trait that has been …

Gene prioritization, communality analysis, networking and metabolic integrated pathway to better understand breast cancer pathogenesis

A López-Cortés, C Paz-y-Miño, A Cabrera-Andrade… - Scientific reports, 2018 - nature.com
Consensus strategy was proved to be highly efficient in the recognition of gene-disease
association. Therefore, the main objective of this study was to apply theoretical approaches …

[HTML][HTML] Genetic foundations of Nellore traits: a gene prioritization and Functional Analyses of Genome-Wide Association Study results

AR Ogunbawo, HA Mulim, GS Campos, HR Oliveira - Genes, 2024 - pmc.ncbi.nlm.nih.gov
The main goal of this study was to pinpoint functional candidate genes associated with
multiple economically important traits in Nellore cattle. After quality control, 1830 genomic …

GUILDify v2. 0: A tool to identify molecular networks underlying human diseases, their comorbidities and their druggable targets

J Aguirre-Plans, J Piñero, F Sanz, LI Furlong… - Journal of molecular …, 2019 - Elsevier
The genetic basis of complex diseases involves alterations on multiple genes. Unraveling
the interplay between these genetic factors is key to the discovery of new biomarkers and …

Determination of shared genetic etiology and possible causal relations between tobacco smoking and depression

Y Yao, Y Xu, Z Cai, Q Liu, Y Ma, AN Li… - Psychological …, 2021 - cambridge.org
BackgroundsCigarette smoking is strongly associated with major depressive disorder
(MDD). However, any genetic etiology of such comorbidity and causal relations is poorly …

Prioritizing target-disease associations with novel safety and efficacy scoring methods

M Failli, J Paananen, V Fortino - Scientific reports, 2019 - nature.com
Biological target (commonly genes or proteins) identification is still largely a manual
process, where experts manually try to collect and combine information from hundreds of …