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Understanding nucleosome dynamics and their links to gene expression and DNA replication
WKM Lai, BF Pugh - Nature reviews Molecular cell biology, 2017 - nature.com
Advances in genomics technology have provided the means to probe myriad chromatin
interactions at unprecedented spatial and temporal resolution. This has led to a profound …
interactions at unprecedented spatial and temporal resolution. This has led to a profound …
Regulation of ribosomal protein genes: An ordered anarchy
C Petibon, M Malik Ghulam, M Catala… - Wiley Interdisciplinary …, 2021 - Wiley Online Library
Ribosomal protein genes are among the most highly expressed genes in most cell types.
Their products are generally essential for ribosome synthesis, which is the cornerstone for …
Their products are generally essential for ribosome synthesis, which is the cornerstone for …
A high-resolution protein architecture of the budding yeast genome
The genome-wide architecture of chromatin-associated proteins that maintains chromosome
integrity and gene regulation is not well defined. Here we use chromatin …
integrity and gene regulation is not well defined. Here we use chromatin …
Genomic nucleosome organization reconstituted with pure proteins
Chromatin remodelers regulate genes by organizing nucleosomes around promoters, but
their individual contributions are obfuscated by the complex in vivo milieu of factor …
their individual contributions are obfuscated by the complex in vivo milieu of factor …
Phase separation directs ubiquitination of gene-body nucleosomes
The conserved yeast E3 ubiquitin ligase Bre1 and its partner, the E2 ubiquitin-conjugating
enzyme Rad6, monoubiquitinate histone H2B across gene bodies during the transcription …
enzyme Rad6, monoubiquitinate histone H2B across gene bodies during the transcription …
Sequence-directed action of RSC remodeler and general regulatory factors modulates+ 1 nucleosome position to facilitate transcription
Accessible chromatin is important for RNA polymerase II recruitment and transcription
initiation at eukaryotic promoters. We investigated the mechanistic links between promoter …
initiation at eukaryotic promoters. We investigated the mechanistic links between promoter …
Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress
From bacteria to humans, individual cells within isogenic populations can show significant
variation in stress tolerance, but the nature of this heterogeneity is not clear. To investigate …
variation in stress tolerance, but the nature of this heterogeneity is not clear. To investigate …
Transcriptional control of ribosome biogenesis in yeast: links to growth and stress signals
D Shore, S Zencir, B Albert - Biochemical Society Transactions, 2021 - portlandpress.com
Ribosome biogenesis requires prodigious transcriptional output in rapidly growing yeast
cells and is highly regulated in response to both growth and stress signals. This minireview …
cells and is highly regulated in response to both growth and stress signals. This minireview …
Developmental and housekee** transcriptional programs in Drosophila require distinct chromatin remodelers
Gene transcription is a highly regulated process in all animals. In Drosophila, two major
transcriptional programs, housekee** and developmental, have promoters with distinct …
transcriptional programs, housekee** and developmental, have promoters with distinct …
What do transcription factors interact with?
H Chen, BF Pugh - Journal of molecular biology, 2021 - Elsevier
Although we have made significant progress, we still possess a limited understanding of
how genomic and epigenomic information directs gene expression programs through …
how genomic and epigenomic information directs gene expression programs through …