Assessing the exceptionality of network motifs

F Picard, JJ Daudin, M Koskas, S Schbath… - Journal of …, 2008 - liebertpub.com
Getting and analyzing biological interaction networks is at the core of systems biology. To
help understanding these complex networks, many recent works have suggested to focus on …

Ch. 2. Models of random graphs and their applications

C Cannings, DB Penman - Handbook of Statistics, 2003 - Elsevier
Publisher Summary Networks are ubiquitous. They arise naturally as models of
communication networks, networks of friends, in the communication of infection, rumors or …

Variational Bayes model averaging for graphon functions and motif frequencies inference in W-graph models

P Latouche, S Robin - Statistics and Computing, 2016 - Springer
W-graph refers to a general class of random graph models that can be seen as a random
graph limit. It is characterized by both its graphon function and its motif frequencies. In this …

U-statistics on bipartite exchangeable networks

T Le Minh - ESAIM: Probability and Statistics, 2023 - esaim-ps.org
Bipartite networks with exchangeable nodes can be represented by row-column
exchangeable matrices. A quadruplet is a submatrix of size 2× 2. A quadruplet U-statistic is …

Characterization of the asymptotic behavior of -statistics on row-column exchangeable matrices

TL Minh - arxiv preprint arxiv:2401.07876, 2024 - arxiv.org
We consider $ U $-statistics on row-column exchangeable matrices. We derive a
decomposition for them, based on orthogonal projections on probability spaces generated …

[PDF][PDF] Assessing the exceptionality of coloured motifs in networks

S Schbath, V Lacroix, MF Sagot - EURASIP Journal on Bioinformatics and …, 2008 - Springer
Various methods have been recently employed to characterise the structure of biological
networks. In particular, the concept of network motif and the related one of coloured motif …

U-statistics of row-column exchangeable matrices: application to ecological network analysis

T Le Minh - 2023 - theses.hal.science
The work presented in this thesis is essentially theoretical, but motivated by ecological
applications. Ecological interaction networks represent the functioning of an ecosystem …

Poisson approximation of subgraph counts in stochastic block models and a graphon model

M Coulson, RE Gaunt, G Reinert - ESAIM: Probability and Statistics, 2016 - esaim-ps.org
Small subgraph counts can be used as summary statistics for large random graphs. We use
the Stein–Chen method to derive Poisson approximations for the distribution of the number …

Motif-based tests for bipartite networks

S Ouadah, P Latouche, S Robin - Electronic Journal of Statistics, 2022 - projecteuclid.org
Bipartite networks are a natural representation of the interactions between entities from two
different types. The organization (or topology) of such networks gives insight to understand …

[PDF][PDF] Bayesian model averaging of stochastic block models to estimate the graphon function and motif frequencies in a w-graph model

P Latouche, S Robin - 2013 - researchgate.net
W-graph refers to a general class of random graph models that can be seen as a random
graph limit. It is characterized by both its graphon function and its motif frequencies. The …