Recommendations for improving statistical inference in population genomics

P Johri, CF Aquadro, M Beaumont, B Charlesworth… - PLoS …, 2022 - journals.plos.org
The field of population genomics has grown rapidly in response to the recent advent of
affordable, large-scale sequencing technologies. As opposed to the situation during the …

Approximate Bayesian computation (ABC) in practice

K Csilléry, MGB Blum, OE Gaggiotti… - Trends in ecology & …, 2010 - cell.com
Understanding the forces that influence natural variation within and among populations has
been a major objective of evolutionary biologists for decades. Motivated by the growth in …

The Bayesian New Statistics: Hypothesis testing, estimation, meta-analysis, and power analysis from a Bayesian perspective

JK Kruschke, TM Liddell - Psychonomic bulletin & review, 2018 - Springer
In the practice of data analysis, there is a conceptual distinction between hypothesis testing,
on the one hand, and estimation with quantified uncertainty on the other. Among frequentists …

Recurrent gene flow between Neanderthals and modern humans over the past 200,000 years

L Li, TJ Comi, RF Bierman, JM Akey - Science, 2024 - science.org
Although it is well known that the ancestors of modern humans and Neanderthals admixed,
the effects of gene flow on the Neanderthal genome are not well understood. We develop …

Approximate Bayesian computation in evolution and ecology

MA Beaumont - Annual review of ecology, evolution, and …, 2010 - annualreviews.org
In the past 10years a statistical technique, approximate Bayesian computation (ABC), has
been developed that can be used to infer parameters and choose between models in the …

The time has come: Bayesian methods for data analysis in the organizational sciences

JK Kruschke, H Aguinis, H Joo - Organizational Research …, 2012 - journals.sagepub.com
The use of Bayesian methods for data analysis is creating a revolution in fields ranging from
genetics to marketing. Yet, results of our literature review, including more than 10,000 …

Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers

KA Selkoe, RJ Toonen - Ecology letters, 2006 - Wiley Online Library
Recent improvements in genetic analysis and genoty** methods have resulted in a rapid
expansion of the power of molecular markers to address ecological questions …

Genetic adaptation to pathogens and increased risk of inflammatory disorders in post-Neolithic Europe

G Kerner, AL Neehus, Q Philippot, J Bohlen, D Rinchai… - Cell genomics, 2023 - cell.com
Ancient genomics can directly detect human genetic adaptation to environmental cues.
However, it remains unclear how pathogens have exerted selective pressures on human …

Reconstructing routes of invasion using genetic data: why, how and so what?

A Estoup, T Guillemaud - Molecular ecology, 2010 - Wiley Online Library
Detailed knowledge about the geographical pathways followed by propagules from their
source to the invading populations—referred to here as routes of invasion—provides …

Genetic monitoring as a promising tool for conservation and management

MK Schwartz, G Luikart, RS Waples - Trends in ecology & evolution, 2007 - cell.com
In response to ever-increasing anthropogenic changes to natural ecosystems, regional,
national and international organizations have established guidelines for monitoring …