Transposable element influences on gene expression in plants
Transposable elements (TEs) comprise a major portion of many plant genomes and bursts
of TE movements cause novel genomic variation within species. In order to maintain proper …
of TE movements cause novel genomic variation within species. In order to maintain proper …
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline
Background Sequencing technology and assembly algorithms have matured to the point
that high-quality de novo assembly is possible for large, repetitive genomes. Current …
that high-quality de novo assembly is possible for large, repetitive genomes. Current …
The first rule of plant transposable element silencing: location, location, location
MJ Sigman, RK Slotkin - The Plant Cell, 2016 - academic.oup.com
Transposable elements (TEs) are mobile units of DNA that comprise large portions of plant
genomes. Besides creating mutations via transposition and contributing to genome size, TEs …
genomes. Besides creating mutations via transposition and contributing to genome size, TEs …
LTR_retriever: a highly accurate and sensitive program for identification of long terminal repeat retrotransposons
Long terminal repeat retrotransposons (LTR-RTs) are prevalent in plant genomes. The
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …
identification of LTR-RTs is critical for achieving high-quality gene annotation. Based on the …
[BOOK][B] Phylogeny and Evolution of the Angiosperms
Although they are relative latecomers on the evolutionary scene, having emerged only 135?
170 million years ago, angiosperms—or flowering plants—are the most diverse and species …
170 million years ago, angiosperms—or flowering plants—are the most diverse and species …
mRNA and small RNA transcriptomes reveal insights into dynamic homoeolog regulation of allopolyploid heterosis in nascent hexaploid wheat
A Li, D Liu, J Wu, X Zhao, M Hao, S Geng, J Yan… - The Plant …, 2014 - academic.oup.com
Nascent allohexaploid wheat may represent the initial genetic state of common wheat
(Triticum aestivum), which arose as a hybrid between Triticum turgidum (AABB) and …
(Triticum aestivum), which arose as a hybrid between Triticum turgidum (AABB) and …
Structural variants in 3000 rice genomes
Investigation of large structural variants (SVs) is a challenging yet important task in
understanding trait differences in highly repetitive genomes. Combining different …
understanding trait differences in highly repetitive genomes. Combining different …
Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice
Transposable elements (TEs) and repetitive sequences make up over 35% of the rice (Oryza
sativa) genome. The host regulates the activity of different TEs by different epigenetic …
sativa) genome. The host regulates the activity of different TEs by different epigenetic …
The genomic ecosystem of transposable elements in maize
Transposable elements (TEs) constitute the majority of flowering plant DNA, reflecting their
tremendous success in subverting, avoiding, and surviving the defenses of their host …
tremendous success in subverting, avoiding, and surviving the defenses of their host …
The bracteatus pineapple genome and domestication of clonally propagated crops
Domestication of clonally propagated crops such as pineapple from South America was
hypothesized to be a 'one-step operation'. We sequenced the genome of Ananas comosus …
hypothesized to be a 'one-step operation'. We sequenced the genome of Ananas comosus …