An integrative view of phylogenetic comparative methods: connections to population genetics, community ecology, and paleobiology

MW Pennell, LJ Harmon - Annals of the New York Academy of …, 2013 - Wiley Online Library
Recent innovations in phylogenetic comparative methods (PCMs) have spurred a
renaissance of research into the causes and consequences of large‐scale patterns of …

A total-evidence approach to dating with fossils, applied to the early radiation of the Hymenoptera

F Ronquist, S Klopfstein, L Vilhelmsen… - Systematic …, 2012 - academic.oup.com
Phylogenies are usually dated by calibrating interior nodes against the fossil record. This
relies on indirect methods that, in the worst case, misrepresent the fossil information. Here …

Does phylogeny matter? Assessing the impact of phylogenetic information in ecological meta‐analysis

SA Chamberlain, SM Hovick, CJ Dibble… - Ecology …, 2012 - Wiley Online Library
Meta‐analysis is increasingly used in ecology and evolutionary biology. Yet, in these fields
this technique has an important limitation: phylogenetic non‐independence exists among …

Taxon sampling and the accuracy of phylogenetic analyses

TA Heath, SM Hedtke, DM Hillis - Journal of systematics and evolution, 2008 - jse.ac.cn
Appropriate and extensive taxon sampling is one of the most important determinants of
accurate phylogenetic estimation. In addition, accuracy of inferences about evolutionary …

[BOOK][B] Phylogeny: discrete and random processes in evolution

M Steel - 2016 - SIAM
The idea that all life on earth traces back to a common origin dates back at least to Charles
Darwin's Origin of Species. Ever since, biologists have tried to piece together parts of this …

Prioritizing phylogenetic diversity captures functional diversity unreliably

F Mazel, MW Pennell, MW Cadotte, S Diaz… - Nature …, 2018 - nature.com
In the face of the biodiversity crisis, it is argued that we should prioritize species in order to
capture high functional diversity (FD). Because species traits often reflect shared …

Amazonian amphibian diversity is primarily derived from late Miocene Andean lineages

JC Santos, LA Coloma, K Summers, JP Caldwell… - PLoS …, 2009 - journals.plos.org
The Neotropics contains half of remaining rainforests and Earth's largest reservoir of
amphibian biodiversity. However, determinants of Neotropical biodiversity (ie, vicariance …

Density-dependent cladogenesis in birds

AB Phillimore, TD Price - PLoS biology, 2008 - journals.plos.org
A characteristic signature of adaptive radiation is a slowing of the rate of speciation toward
the present. On the basis of molecular phylogenies, studies of single clades have frequently …

[PDF][PDF] Phylogenetic comparative methods: learning from trees

L Harmon - 2019 - ecoevorxiv.org
Evolution is happening all around us. In many cases–lately, due to technological advances
in molecular biology–scientists can now describe the evolutionary process in exquisite …

[BOOK][B] Computational phylogenetics: an introduction to designing methods for phylogeny estimation

T Warnow - 2018 - books.google.com
A comprehensive account of both basic and advanced material in phylogeny estimation,
focusing on computational and statistical issues. No background in biology or computer …