Hologenomic data generation and analysis in wild vertebrates

C Pietroni, N Gaun, A Leonard… - Methods in Ecology …, 2025 - Wiley Online Library
Hologenomics, the joint analysis of host genomes and microbial metagenomes, has the
potential to address fundamental biological questions from a systemic host‐microbiota …

Diversity and distribution of biosynthetic gene clusters in agricultural soil microbiomes

Z Zhang, L Zhang, L Zhang, H Chu, J Zhou, F Ju - Msystems, 2024 - journals.asm.org
Bacterial secondary metabolites serve as an important source of molecules for drug
discovery. They also play an important function in mediating the interactions of microbial …

Antarctic geothermal soils exhibit an absence of regional habitat generalist microorganisms

SE Noell, J Abbaszadeh, H Richards… - Environmental …, 2025 - Wiley Online Library
Active geothermal systems are relatively rare in Antarctica and represent metaphorical
islands ideal to study microbial dispersal. In this study, we tested the macro‐ecological …

Evaluating Climate Warming Effects on Soil Resistome and Pathogenome: Future Risks for Agriculture and Human Health

Z Zhang, F Ju - bioRxiv, 2024 - biorxiv.org
How climate change affects soil antibiotic resistome (ie, the collection of antibiotic resistance
genes) is a critical question for environmental and human health. By examining the …

[PDF][PDF] Future Climate Scenarios Aggravate Health Risks of Soil Microbiome by Resha** Resistome and Pathogenome

Z Zhang, F Ju - bioRxiv, 2024 - storage.prod.researchhub.com
How climate change affects the collection of antibiotic resistance genes (ARGs), called
resistome, is a critical question for environmental and human health. By scrutinizing the …

Integrated genomics provides insights for the evolution of the polyphosphate accumulation trait of Ca. Accumulibacter

X **e, X Deng, L Chen, J Yuan, H Chen, C Wei, X Liu… - bioRxiv, 2023 - biorxiv.org
Candidatus Accumulibacter plays a major role in enhanced biological phosphorus removal
(EBPR), but the key genomic elements in metagenome assembled genomes enabling their …