Scientific discovery in the age of artificial intelligence

H Wang, T Fu, Y Du, W Gao, K Huang, Z Liu… - Nature, 2023 - nature.com
Artificial intelligence (AI) is being increasingly integrated into scientific discovery to augment
and accelerate research, hel** scientists to generate hypotheses, design experiments …

Artificial intelligence for drug discovery: are we there yet?

C Hasselgren, TI Oprea - Annual Review of Pharmacology and …, 2024 - annualreviews.org
Drug discovery is adapting to novel technologies such as data science, informatics, and
artificial intelligence (AI) to accelerate effective treatment development while reducing costs …

Multi-modal molecule structure–text model for text-based retrieval and editing

S Liu, W Nie, C Wang, J Lu, Z Qiao, L Liu… - Nature Machine …, 2023 - nature.com
There is increasing adoption of artificial intelligence in drug discovery. However, existing
studies use machine learning to mainly utilize the chemical structures of molecules but …

Knowledge graph-enhanced molecular contrastive learning with functional prompt

Y Fang, Q Zhang, N Zhang, Z Chen, X Zhuang… - Nature Machine …, 2023 - nature.com
Deep learning models can accurately predict molecular properties and help making the
search for potential drug candidates faster and more efficient. Many existing methods are …

Long range graph benchmark

VP Dwivedi, L Rampášek, M Galkin… - Advances in …, 2022 - proceedings.neurips.cc
Abstract Graph Neural Networks (GNNs) that are based on the message passing (MP)
paradigm generally exchange information between 1-hop neighbors to build node …

Uni-mol: A universal 3d molecular representation learning framework

G Zhou, Z Gao, Q Ding, H Zheng, H Xu, Z Wei, L Zhang… - 2023 - chemrxiv.org
Molecular representation learning (MRL) has gained tremendous attention due to its critical
role in learning from limited supervised data for applications like drug design. In most MRL …

Deep learning methods for molecular representation and property prediction

Z Li, M Jiang, S Wang, S Zhang - Drug Discovery Today, 2022 - Elsevier
Highlights•The deep learning method could effectively represent the molecular structure and
predict molecular property through diversified models.•One, two, and three-dimensional …

Artificial intelligence for science in quantum, atomistic, and continuum systems

X Zhang, L Wang, J Helwig, Y Luo, C Fu, Y **e… - arxiv preprint arxiv …, 2023 - arxiv.org
Advances in artificial intelligence (AI) are fueling a new paradigm of discoveries in natural
sciences. Today, AI has started to advance natural sciences by improving, accelerating, and …

Scientific large language models: A survey on biological & chemical domains

Q Zhang, K Ding, T Lv, X Wang, Q Yin, Y Zhang… - ACM Computing …, 2024 - dl.acm.org
Large Language Models (LLMs) have emerged as a transformative power in enhancing
natural language comprehension, representing a significant stride toward artificial general …

Accurate prediction of molecular properties and drug targets using a self-supervised image representation learning framework

X Zeng, H **ang, L Yu, J Wang, K Li… - Nature Machine …, 2022 - nature.com
The clinical efficacy and safety of a drug is determined by its molecular properties and
targets in humans. However, proteome-wide evaluation of all compounds in humans, or …