Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR

A Tropsha, O Isayev, A Varnek, G Schneider… - Nature Reviews Drug …, 2024 - nature.com
Quantitative structure–activity relationship (QSAR) modelling, an approach that was
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …

Organic reactivity from mechanism to machine learning

K Jorner, A Tomberg, C Bauer, C Sköld… - Nature Reviews …, 2021 - nature.com
As more data are introduced in the building of models of chemical reactivity, the mechanistic
component can be reduced until 'big data'applications are reached. These methods no …

Automated experimentation powers data science in chemistry

Y Shi, PL Prieto, T Zepel, S Grunert… - Accounts of Chemical …, 2021 - ACS Publications
Conspectus Data science has revolutionized chemical research and continues to break
down barriers with new interdisciplinary studies. The introduction of computational models …

Machine learning meets mechanistic modelling for accurate prediction of experimental activation energies

K Jorner, T Brinck, PO Norrby, D Buttar - Chemical Science, 2021 - pubs.rsc.org
Accurate prediction of chemical reactions in solution is challenging for current state-of-the-
art approaches based on transition state modelling with density functional theory. Models …

A transformer model for retrosynthesis

P Karpov, G Godin, IV Tetko - International Conference on Artificial Neural …, 2019 - Springer
We describe a Transformer model for a retrosynthetic reaction prediction task. The model is
trained on 45 033 experimental reaction examples extracted from USA patents. It can …

Artificial intelligence and automation in computer aided synthesis planning

A Thakkar, S Johansson, K Jorner, D Buttar… - Reaction chemistry & …, 2021 - pubs.rsc.org
In this perspective we deal with questions pertaining to the development of synthesis
planning technologies over the course of recent years. We first answer the question: what is …

Mechanistic Inference from Statistical Models at Different Data-Size Regimes

DM Lustosa, A Milo - ACS Catalysis, 2022 - ACS Publications
The chemical sciences are witnessing an influx of statistics into the catalysis literature.
These developments are propelled by modern technological advancements that are leading …

Discovery of novel chemical reactions by deep generative recurrent neural network

W Bort, II Baskin, T Gimadiev, A Mukanov… - Scientific reports, 2021 - nature.com
Abstract The “creativity” of Artificial Intelligence (AI) in terms of generating de novo molecular
structures opened a novel paradigm in compound design, weaknesses (stability & feasibility …

Emulsion liquid membrane for simultaneous extraction and separation of copper from nickel in ammoniacal solutions

G Zhu, Y Wang, Q Huang, R Zhang, D Chen… - Minerals …, 2022 - Elsevier
The separation of copper and nickel in ammonia solution is challenging in hydrometallurgy.
In this work, an emulsion liquid membrane (ELM) was constructed using M5640 as an …

Comprehensive analysis of applicability domains of QSPR models for chemical reactions

A Rakhimbekova, TI Madzhidov, RI Nugmanov… - International Journal of …, 2020 - mdpi.com
Nowadays, the problem of the model's applicability domain (AD) definition is an active
research topic in chemoinformatics. Although many various AD definitions for the models …