Neutrophil heterogeneity: implications for homeostasis and pathogenesis

C Silvestre-Roig, A Hidalgo… - Blood, The Journal of …, 2016 - ashpublications.org
Neutrophils are polymorphonuclear leukocytes of the phagocytic system that act as first line
of host defense against invading pathogens but are also important mediators of …

Epigenetic control of myeloid cell differentiation, identity and function

D Álvarez-Errico, R Vento-Tormo, M Sieweke… - Nature Reviews …, 2015 - nature.com
Myeloid cells are crucial effectors of the innate immune response and important regulators of
adaptive immunity. The differentiation and activation of myeloid cells requires the timely …

A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies

AE Teschendorff, CE Breeze, SC Zheng, S Beck - BMC bioinformatics, 2017 - Springer
Background Intra-sample cellular heterogeneity presents numerous challenges to the
identification of biomarkers in large Epigenome-Wide Association Studies (EWAS). While a …

HIV-1 infection accelerates age according to the epigenetic clock

S Horvath, AJ Levine - The Journal of infectious diseases, 2015 - academic.oup.com
Background. Infection with human immunodeficiency virus type 1 (HIV) is associated with
clinical symptoms of accelerated aging, as evidenced by the increased incidence and …

The European Genome-phenome Archive of human data consented for biomedical research

I Lappalainen, J Almeida-King, V Kumanduri, A Senf… - Nature …, 2015 - nature.com
Abstract The European Genome-phenome Archive (EGA) is a permanent archive that
promotes the distribution and sharing of genetic and phenotypic data consented for specific …

Identification of differentially methylated cell types in epigenome-wide association studies

SC Zheng, CE Breeze, S Beck, AE Teschendorff - Nature methods, 2018 - nature.com
An outstanding challenge of epigenome-wide association studies (EWASs) performed in
complex tissues is the identification of the specific cell type (s) responsible for the observed …

A novel cell-type deconvolution algorithm reveals substantial contamination by immune cells in saliva, buccal and cervix

SC Zheng, AP Webster, D Dong, A Feber… - …, 2018 - Taylor & Francis
Aim: An outstanding challenge in epigenome studies is the estimation of cell-type
proportions in complex epithelial tissues. Materials & methods: Here, we construct and …

Ageing-associated changes in the human DNA methylome: genomic locations and effects on gene expression

S Marttila, L Kananen, S Häyrynen, J Jylhävä… - BMC genomics, 2015 - Springer
Background Changes in DNA methylation are among the mechanisms contributing to the
ageing process. We sought to identify ageing-associated DNA methylation changes at …

Understanding the relevance of DNA methylation changes in immune differentiation and disease

C Calle-Fabregat, O Morante-Palacios, E Ballestar - Genes, 2020 - mdpi.com
Immune cells are one of the most complex and diverse systems in the human organism.
Such diversity implies an intricate network of different cell types and interactions that are …

MethylResolver—a method for deconvoluting bulk DNA methylation profiles into known and unknown cell contents

D Arneson, X Yang, K Wang - Communications biology, 2020 - nature.com
Bulk tissue DNA methylation profiling has been used to examine epigenetic mechanisms
and biomarkers of complex diseases such as cancer. However, heterogeneity of cellular …