Neutrophil heterogeneity: implications for homeostasis and pathogenesis
C Silvestre-Roig, A Hidalgo… - Blood, The Journal of …, 2016 - ashpublications.org
Neutrophils are polymorphonuclear leukocytes of the phagocytic system that act as first line
of host defense against invading pathogens but are also important mediators of …
of host defense against invading pathogens but are also important mediators of …
Epigenetic control of myeloid cell differentiation, identity and function
Myeloid cells are crucial effectors of the innate immune response and important regulators of
adaptive immunity. The differentiation and activation of myeloid cells requires the timely …
adaptive immunity. The differentiation and activation of myeloid cells requires the timely …
A comparison of reference-based algorithms for correcting cell-type heterogeneity in Epigenome-Wide Association Studies
Background Intra-sample cellular heterogeneity presents numerous challenges to the
identification of biomarkers in large Epigenome-Wide Association Studies (EWAS). While a …
identification of biomarkers in large Epigenome-Wide Association Studies (EWAS). While a …
HIV-1 infection accelerates age according to the epigenetic clock
S Horvath, AJ Levine - The Journal of infectious diseases, 2015 - academic.oup.com
Background. Infection with human immunodeficiency virus type 1 (HIV) is associated with
clinical symptoms of accelerated aging, as evidenced by the increased incidence and …
clinical symptoms of accelerated aging, as evidenced by the increased incidence and …
The European Genome-phenome Archive of human data consented for biomedical research
I Lappalainen, J Almeida-King, V Kumanduri, A Senf… - Nature …, 2015 - nature.com
Abstract The European Genome-phenome Archive (EGA) is a permanent archive that
promotes the distribution and sharing of genetic and phenotypic data consented for specific …
promotes the distribution and sharing of genetic and phenotypic data consented for specific …
Identification of differentially methylated cell types in epigenome-wide association studies
An outstanding challenge of epigenome-wide association studies (EWASs) performed in
complex tissues is the identification of the specific cell type (s) responsible for the observed …
complex tissues is the identification of the specific cell type (s) responsible for the observed …
A novel cell-type deconvolution algorithm reveals substantial contamination by immune cells in saliva, buccal and cervix
Aim: An outstanding challenge in epigenome studies is the estimation of cell-type
proportions in complex epithelial tissues. Materials & methods: Here, we construct and …
proportions in complex epithelial tissues. Materials & methods: Here, we construct and …
Ageing-associated changes in the human DNA methylome: genomic locations and effects on gene expression
Background Changes in DNA methylation are among the mechanisms contributing to the
ageing process. We sought to identify ageing-associated DNA methylation changes at …
ageing process. We sought to identify ageing-associated DNA methylation changes at …
Understanding the relevance of DNA methylation changes in immune differentiation and disease
Immune cells are one of the most complex and diverse systems in the human organism.
Such diversity implies an intricate network of different cell types and interactions that are …
Such diversity implies an intricate network of different cell types and interactions that are …
MethylResolver—a method for deconvoluting bulk DNA methylation profiles into known and unknown cell contents
Bulk tissue DNA methylation profiling has been used to examine epigenetic mechanisms
and biomarkers of complex diseases such as cancer. However, heterogeneity of cellular …
and biomarkers of complex diseases such as cancer. However, heterogeneity of cellular …