Leveraging artificial intelligence in the fight against infectious diseases

F Wong, C de la Fuente-Nunez, JJ Collins - Science, 2023 - science.org
Despite advances in molecular biology, genetics, computation, and medicinal chemistry,
infectious disease remains an ominous threat to public health. Addressing the challenges …

Machine learning in preclinical drug discovery

DB Catacutan, J Alexander, A Arnold… - Nature Chemical …, 2024 - nature.com
Drug-discovery and drug-development endeavors are laborious, costly and time consuming.
These programs can take upward of 12 years and cost US $2.5 billion, with a failure rate of …

Deep learning-guided discovery of an antibiotic targeting Acinetobacter baumannii

G Liu, DB Catacutan, K Rathod, K Swanson… - Nature Chemical …, 2023 - nature.com
Acinetobacter baumannii is a nosocomial Gram-negative pathogen that often displays
multidrug resistance. Discovering new antibiotics against A. baumannii has proven …

A comprehensive overview of globally approved JAK inhibitors

AM Shawky, FA Almalki, AN Abdalla, AH Abdelazeem… - Pharmaceutics, 2022 - mdpi.com
Janus kinase (JAK) is a family of cytoplasmic non-receptor tyrosine kinases that includes
four members, namely JAK1, JAK2, JAK3, and TYK2. The JAKs transduce cytokine signaling …

A roadmap for multi-omics data integration using deep learning

M Kang, E Ko, TB Mersha - Briefings in Bioinformatics, 2022 - academic.oup.com
High-throughput next-generation sequencing now makes it possible to generate a vast
amount of multi-omics data for various applications. These data have revolutionized …

DeepTraSynergy: drug combinations using multimodal deep learning with transformers

F Rafiei, H Zeraati, K Abbasi, JB Ghasemi… - …, 2023 - academic.oup.com
Motivation Screening bioactive compounds in cancer cell lines receive more attention.
Multidisciplinary drugs or drug combinations have a more effective role in treatments and …

Trustworthy graph neural networks: Aspects, methods and trends

H Zhang, B Wu, X Yuan, S Pan, H Tong… - arxiv preprint arxiv …, 2022 - arxiv.org
Graph neural networks (GNNs) have emerged as a series of competent graph learning
methods for diverse real-world scenarios, ranging from daily applications like …

Unified 2d and 3d pre-training of molecular representations

J Zhu, Y **a, L Wu, S **e, T Qin, W Zhou, H Li… - Proceedings of the 28th …, 2022 - dl.acm.org
Molecular representation learning has attracted much attention recently. A molecule can be
viewed as a 2D graph with nodes/atoms connected by edges/bonds, and can also be …

Artificial intelligence and internet of things (AI-IoT) technologies in response to COVID-19 pandemic: A systematic review

JI Khan, J Khan, F Ali, F Ullah, J Bacha, S Lee - Ieee Access, 2022 - ieeexplore.ieee.org
The origin of the COVID-19 pandemic has given overture to redirection, as well as
innovation to many digital technologies. Even after the progression of vaccination efforts …

Inductive graph unlearning

CL Wang, M Huai, D Wang - 32nd USENIX Security Symposium …, 2023 - usenix.org
As a way to implement the" right to be forgotten" in machine learning, machine unlearning
aims to completely remove the contributions and information of the samples to be deleted …