Biolink Model: A universal schema for knowledge graphs in clinical, biomedical, and translational science
Within clinical, biomedical, and translational science, an increasing number of projects are
adopting graphs for knowledge representation. Graph‐based data models elucidate the …
adopting graphs for knowledge representation. Graph‐based data models elucidate the …
PomBase: a Global Core Biodata Resource—growth, collaboration, and sustainability
Abstract PomBase (https://www. pombase. org), the model organism database (MOD) for
fission yeast, was recently awarded Global Core Biodata Resource (GCBR) status by the …
fission yeast, was recently awarded Global Core Biodata Resource (GCBR) status by the …
Generalisable long COVID subtypes: findings from the NIH N3C and RECOVER programmes
Background Stratification of patients with post-acute sequelae of SARS-CoV-2 infection
(PASC, or long COVID) would allow precision clinical management strategies. However …
(PASC, or long COVID) would allow precision clinical management strategies. However …
A simple standard for sharing ontological map**s (SSSOM)
Despite progress in the development of standards for describing and exchanging scientific
information, the lack of easy-to-use standards for map** between different representations …
information, the lack of easy-to-use standards for map** between different representations …
Dynamic retrieval augmented generation of ontologies using artificial intelligence (DRAGON-AI)
Background Ontologies are fundamental components of informatics infrastructure in
domains such as biomedical, environmental, and food sciences, representing consensus …
domains such as biomedical, environmental, and food sciences, representing consensus …
DeepGOZero: improving protein function prediction from sequence and zero-shot learning based on ontology axioms
Motivation Protein functions are often described using the Gene Ontology (GO) which is an
ontology consisting of over 50 000 classes and a large set of formal axioms. Predicting the …
ontology consisting of over 50 000 classes and a large set of formal axioms. Predicting the …
2022 updates to the Rat Genome Database: a findable, accessible, interoperable, and reusable (FAIR) resource
M Vedi, JR Smith, G Thomas Hayman, M Tutaj… - Genetics, 2023 - academic.oup.com
Abstract The Rat Genome Database (RGD, https://rgd. mcw. edu) has evolved from simply a
resource for rat genetic markers, maps, and genes, by adding multiple genomic data types …
resource for rat genetic markers, maps, and genes, by adding multiple genomic data types …
Ontology Development Kit: a toolkit for building, maintaining and standardizing biomedical ontologies
Similar to managing software packages, managing the ontology life cycle involves multiple
complex workflows such as preparing releases, continuous quality control checking and …
complex workflows such as preparing releases, continuous quality control checking and …
The use of ontologies to accelerate the behavioral sciences: Promises and challenges
Behavioral scientists produce a vast amount of research every year yet struggle to produce
cumulative knowledge that is easily translated in applied settings. This article summarizes a …
cumulative knowledge that is easily translated in applied settings. This article summarizes a …
Unifying the identification of biomedical entities with the Bioregistry
The standardized identification of biomedical entities is a cornerstone of interoperability,
reuse, and data integration in the life sciences. Several registries have been developed to …
reuse, and data integration in the life sciences. Several registries have been developed to …