Modern Bayesian experimental design

T Rainforth, A Foster, DR Ivanova… - Statistical …, 2024 - projecteuclid.org
Bayesian experimental design (BED) provides a powerful and general framework for
optimizing the design of experiments. However, its deployment often poses substantial …

Advances in variational inference

C Zhang, J Bütepage, H Kjellström… - IEEE transactions on …, 2018 - ieeexplore.ieee.org
Many modern unsupervised or semi-supervised machine learning algorithms rely on
Bayesian probabilistic models. These models are usually intractable and thus require …

On variational bounds of mutual information

B Poole, S Ozair, A Van Den Oord… - International …, 2019 - proceedings.mlr.press
Abstract Estimating and optimizing Mutual Information (MI) is core to many problems in
machine learning, but bounding MI in high dimensions is challenging. To establish tractable …

Ultra-large library docking for discovering new chemotypes

J Lyu, S Wang, TE Balius, I Singh, A Levit, YS Moroz… - Nature, 2019 - nature.com
Despite intense interest in expanding chemical space, libraries containing hundreds-of-
millions to billions of diverse molecules have remained inaccessible. Here we investigate …

Virtual adversarial training: a regularization method for supervised and semi-supervised learning

T Miyato, S Maeda, M Koyama… - IEEE transactions on …, 2018 - ieeexplore.ieee.org
We propose a new regularization method based on virtual adversarial loss: a new measure
of local smoothness of the conditional label distribution given input. Virtual adversarial loss …

Disentangling disentanglement in variational autoencoders

E Mathieu, T Rainforth, N Siddharth… - … on machine learning, 2019 - proceedings.mlr.press
We develop a generalisation of disentanglement in variational autoencoders (VAEs)—
decomposition of the latent representation—characterising it as the fulfilment of two factors …

Optimal experimental design: Formulations and computations

X Huan, J Jagalur, Y Marzouk - Acta Numerica, 2024 - cambridge.org
Questions of 'how best to acquire data'are essential to modelling and prediction in the
natural and social sciences, engineering applications, and beyond. Optimal experimental …

Gflownets for ai-driven scientific discovery

M Jain, T Deleu, J Hartford, CH Liu… - Digital …, 2023 - pubs.rsc.org
Tackling the most pressing problems for humanity, such as the climate crisis and the threat
of global pandemics, requires accelerating the pace of scientific discovery. While science …

An introduction to probabilistic programming

JW Van de Meent, B Paige, H Yang, F Wood - arxiv preprint arxiv …, 2018 - arxiv.org
This book is a graduate-level introduction to probabilistic programming. It not only provides a
thorough background for anyone wishing to use a probabilistic programming system, but …

Deep adaptive design: Amortizing sequential bayesian experimental design

A Foster, DR Ivanova, I Malik… - … conference on machine …, 2021 - proceedings.mlr.press
Abstract We introduce Deep Adaptive Design (DAD), a method for amortizing the cost of
adaptive Bayesian experimental design that allows experiments to be run in real-time …