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Phase separation in genome organization across evolution
Phase separation is emerging as a paradigm to explain the self-assembly and organization
of membraneless bodies in the cell. Recent advances show that this principle also extends …
of membraneless bodies in the cell. Recent advances show that this principle also extends …
Nucleoid-associated proteins shape chromatin structure and transcriptional regulation across the bacterial kingdom
Genome architecture has proven to be critical in determining gene regulation across almost
all domains of life. While many of the key components and mechanisms of eukaryotic …
all domains of life. While many of the key components and mechanisms of eukaryotic …
WHIRLIES are multifunctional DNA-binding proteins with impact on plant development and stress resistance
K Krupinska, C Desel, S Frank, G Hensel - Frontiers in Plant Science, 2022 - frontiersin.org
WHIRLIES are plant-specific proteins binding to DNA in plastids, mitochondria, and nucleus.
They have been identified as significant components of nucleoids in the organelles where …
They have been identified as significant components of nucleoids in the organelles where …
The roles of nucleoid-associated proteins and topoisomerases in chromosome structure, strand segregation, and the generation of phenotypic heterogeneity in …
How to adapt to a changing environment is a fundamental, recurrent problem confronting
cells. One solution is for cells to organize their constituents into a limited number of spatially …
cells. One solution is for cells to organize their constituents into a limited number of spatially …
Spatial features and functional implications of plant 3D genome organization
K Domb, N Wang, G Hummel… - Annual Review of Plant …, 2022 - annualreviews.org
The advent of high-throughput sequencing-based methods for chromatin conformation,
accessibility, and immunoprecipitation assays has been a turning point in 3D genomics …
accessibility, and immunoprecipitation assays has been a turning point in 3D genomics …
Soft X‐ray tomograms provide a structural basis for whole‐cell modeling
Develo** in silico models that accurately reflect a whole, functional cell is an ongoing
challenge in biology. Current efforts bring together mathematical models, probabilistic …
challenge in biology. Current efforts bring together mathematical models, probabilistic …
Self‐assembly of multi‐component mitochondrial nucleoids via phase separation
Mitochondria contain an autonomous and spatially segregated genome. The organizational
unit of their genome is the nucleoid, which consists of mitochondrial DNA (mtDNA) and …
unit of their genome is the nucleoid, which consists of mitochondrial DNA (mtDNA) and …
Spatial rearrangement of the Streptomyces venezuelae linear chromosome during sporogenic development
MJ Szafran, T Małecki, A Strzałka… - Nature …, 2021 - nature.com
Bacteria of the genus Streptomyces have a linear chromosome, with a core region and two
'arms'. During their complex life cycle, these bacteria develop multi-genomic hyphae that …
'arms'. During their complex life cycle, these bacteria develop multi-genomic hyphae that …
Integration host factor bends and bridges DNA in a multiplicity of binding modes with varying specificity
Nucleoid-associated proteins (NAPs) are crucial in organizing prokaryotic DNA and
regulating genes. Vital to these activities are complex nucleoprotein structures, however …
regulating genes. Vital to these activities are complex nucleoprotein structures, however …
Non‐specific and specific DNA binding modes of bacterial histone, HU, separately regulate distinct physiological processes through different mechanisms
The histone‐like protein HU plays a diverse role in bacterial physiology from the
maintenance of chromosome structure to the regulation of gene transcription. HU binds DNA …
maintenance of chromosome structure to the regulation of gene transcription. HU binds DNA …