Machine learning for functional protein design

P Notin, N Rollins, Y Gal, C Sander, D Marks - Nature biotechnology, 2024 - nature.com
Recent breakthroughs in AI coupled with the rapid accumulation of protein sequence and
structure data have radically transformed computational protein design. New methods …

[HTML][HTML] Therapeutic antibodies in medicine

P Sharma, RV Joshi, R Pritchard, K Xu, MA Eicher - Molecules, 2023 - mdpi.com
Antibody engineering has developed into a wide-reaching field, impacting a multitude of
industries, most notably healthcare and diagnostics. The seminal work on develo** the …

Atomically accurate de novo design of single-domain antibodies

NR Bennett, JL Watson, RJ Ragotte, AJ Borst, DL See… - biorxiv, 2024 - pmc.ncbi.nlm.nih.gov
Despite the central role that antibodies play in modern medicine, there is currently no way to
rationally design novel antibodies to bind a specific epitope on a target. Instead, antibody …

Scientists' Perspectives on the Potential for Generative AI in their Fields

MR Morris - arxiv preprint arxiv:2304.01420, 2023 - arxiv.org
Generative AI models, including large language models and multimodal models that include
text and other media, are on the cusp of transforming many aspects of modern life, including …

Theranostics and artificial intelligence: new frontiers in personalized medicine

GB Bilgin, C Bilgin, BJ Burkett, JJ Orme… - …, 2024 - pmc.ncbi.nlm.nih.gov
The field of theranostics is rapidly advancing, driven by the goals of enhancing patient care.
Recent breakthroughs in artificial intelligence (AI) and its innovative theranostic applications …

Large scale paired antibody language models

H Kenlay, FA Dreyer, A Kovaltsuk… - PLOS Computational …, 2024 - journals.plos.org
Antibodies are proteins produced by the immune system that can identify and neutralise a
wide variety of antigens with high specificity and affinity, and constitute the most successful …

Ai models for protein design are driving antibody engineering

MF Chungyoun, JJ Gray - Current opinion in biomedical engineering, 2023 - Elsevier
Therapeutic antibody engineering seeks to identify antibody sequences with specific binding
to a target and optimized drug-like properties. When guided by deep learning, antibody …

Academic surgery in the era of large language models: a review

TA Rengers, CA Thiels, H Salehinejad - JAMA surgery, 2024 - jamanetwork.com
Importance This review aims to assess the benefits and risks of implementing large
language model (LLM) solutions in an academic surgical setting. Observations The …

ChatGPT, large language models, and generative AI as future augments of surgical cancer care

AN Kothari - Annals of surgical oncology, 2023 - Springer
Released in November of 2022 as a public and free research preview, ChatGPT rapidly
brought OpenAI's work with autoregressive large language modeling based on Generative …

Pretrainable geometric graph neural network for antibody affinity maturation

H Cai, Z Zhang, M Wang, B Zhong, Q Li… - Nature …, 2024 - nature.com
Increasing the binding affinity of an antibody to its target antigen is a crucial task in antibody
therapeutics development. This paper presents a pretrainable geometric graph neural …