ZIB structure prediction pipeline: composing a complex biological workflow through web services

P May, HC Ehrlich, T Steinke - Euro-Par 2006 Parallel Processing: 12th …, 2006 - Springer
In life sciences, scientists are confronted with an exponential growth of biological data,
especially in the genomics and proteomics area. The efficient management and use of these …

Towards supporting the life cycle of large scale scientific experiments

M Mattoso, C Werner, GH Travassos… - International …, 2010 - inderscienceonline.com
One of the main challenges of scientific experiments is to allow scientists to manage and
exchange their scientific computational resources (data, programs, models, etc.). The …

Towards a taxonomy of provenance in scientific workflow management systems

SMS da Cruz, MLM Campos… - 2009 Congress on …, 2009 - ieeexplore.ieee.org
Scientific workflow management systems (SWfMS) have been hel** scientists to prototype
and execute in silico experiments. They can systematically collect provenance information …

Structural modelling and comparative analysis of homologous, analogous and specific proteins from Trypanosoma cruzi versus Homo sapiens: putative drug targets …

PVSZ Capriles, ACR Guimarães, TD Otto, AB Miranda… - BMC genomics, 2010 - Springer
Background Trypanosoma cruzi is the etiological agent of Chagas' disease, an endemic
infection that causes thousands of deaths every year in Latin America. Therapeutic options …

WOODSS and the Web: annotating and reusing scientific workflows

CB Medeiros, J Perez-Alcazar, L Digiampietri… - ACM SIGMOD …, 2005 - dl.acm.org
This paper discusses ongoing research on scientific workflows at the Institute of Computing,
University of Campinas (IC-UNICAMP) Brazil. Our projects with bio-scientists have led us to …

WPS orchestration using the Taverna workbench: The eScience approach

J de Jesus, P Walker, M Grant, S Groom - Computers & Geosciences, 2012 - Elsevier
eScience is an umbrella concept which covers internet technologies, such as web service
orchestration that involves manipulation and processing of high volumes of data, using …

Capturing custom link semantics among heterogeneous artifacts and tools

HU Asuncion, RN Taylor - … on Traceability in Emerging Forms of …, 2009 - ieeexplore.ieee.org
Automated techniques aid in minimizing the overhead associated with the capture and
maintenance of trace links. However, many challenges to automated traceability remain …

[PDF][PDF] Similarity-based workflow clustering

V Silva, F Chirigati, K Maia, E Ogasawara, D Oliveira… - JCIS, 2011 - researchgate.net
Scientists have been using scientific workflow management systems (SWfMS) to support
scientific experiments. However, SWfMS expect a modeled workflow to be represented on its …

Semi‐automated workflows for acquiring specimen data from label images in herbarium collections

Í Granzow-de la Cerda, JH Beach - Taxon, 2010 - Wiley Online Library
Computational workflow environments are an active area of computer science and
informatics research; they promise to be effective for automating biological information …

[PDF][PDF] Gerenciando experimentos científicos em larga escala

M Mattoso, C Werner, G Travassos, V Braganholo… - SBC-SEMISH, 2008 - sbc.org.br
Several scientific areas, such as bioinformatics and oil engineering, need means of
executing simulation-based experiments. The state of the practice for this, in most of the …