[HTML][HTML] Pursuing excitonic energy transfer with programmable DNA-based optical breadboards

D Mathur, SA Díaz, N Hildebrandt… - Chemical Society …, 2023 - pubs.rsc.org
DNA nanotechnology has now enabled the self-assembly of almost any prescribed 3-
dimensional nanoscale structure in large numbers and with high fidelity. These structures …

Alternating-laser excitation: single-molecule FRET and beyond

J Hohlbein, TD Craggs, T Cordes - Chemical Society Reviews, 2014 - pubs.rsc.org
The alternating-laser excitation (ALEX) scheme continues to expand the possibilities of
fluorescence-based assays to study biological entities and interactions. Especially the …

DNAzyme-powered three-dimensional DNA walker nanoprobe for detection amyloid β-peptide oligomer in living cells and in vivo

Y Yin, G Chen, L Gong, K Ge, W Pan, N Li… - Analytical …, 2020 - ACS Publications
Amyloid β-peptide oligomer (AβO) is widely acknowledged as the promising biomarker for
the diagnosis of Alzheimer's disease (AD). In this work, we designed a three-dimensional …

Recent progress on DNA based walkers

J Pan, F Li, TG Cha, H Chen, JH Choi - Current opinion in biotechnology, 2015 - Elsevier
Highlights•We review the walking principles for DNA based synthetic molecular walkers.•We
discuss characterization methods suitable for probing individual DNA walkers.•We evaluate …

A DNA walker as a fluorescence signal amplifier

D Wang, C Vietz, T Schröder, G Acuna, B Lalkens… - Nano …, 2017 - ACS Publications
Sensing nucleic acids typically involves the recognition of a specific sequence and reporting
by, for example, a fluorogenic reaction yielding one activated dye molecule per detected …

Optimizing DNA nanotechnology through coarse-grained modeling: a two-footed DNA walker

TE Ouldridge, RL Hoare, AA Louis, JPK Doye, J Bath… - ACS …, 2013 - ACS Publications
DNA has enormous potential as a programmable material for creating artificial nanoscale
structures and devices. For more complex systems, however, rational design and …

Rational design of DNA motors: fuel optimization through single-molecule fluorescence

TE Tomov, R Tsukanov, M Liber… - Journal of the …, 2013 - ACS Publications
While numerous DNA-based molecular machines have been developed in recent years,
high operational yield and speed remain a major challenge. To understand the reasons for …

Allostery through DNA drives phenotype switching

G Rosenblum, N Elad, H Rozenberg, F Wiggers… - Nature …, 2021 - nature.com
Allostery is a pervasive principle to regulate protein function. Growing evidence suggests
that also DNA is capable of transmitting allosteric signals. Yet, whether and how DNA …

DNA origami as emerging technology for the engineering of fluorescent and plasmonic-based biosensors

M Loretan, I Domljanovic, M Lakatos, C Rüegg… - Materials, 2020 - mdpi.com
DNA nanotechnology is a powerful and promising tool for the development of nanoscale
devices for numerous and diverse applications. One of the greatest potential fields of …

A bipedal DNA motor that travels back and forth between two DNA origami tiles

M Liber, TE Tomov, R Tsukanov, Y Berger, E Nir - Small, 2015 - Wiley Online Library
In this work, the successful operation of a dynamic DNA device constructed from two DNA
origami building blocks is reported. The device includes a bipedal walker that strides back …