Predictive catalysis: a valuable step towards machine learning

R Monreal-Corona, A Pla-Quintana, A Poater - Trends in Chemistry, 2023 - cell.com
As physical chemistry transitioned to computational chemistry, a new growth occurred in the
field with the advent of predictive catalysis, making it a key player in the optimization and …

The IUPHAR/BPS guide to PHARMACOLOGY in 2024

SD Harding, JF Armstrong, E Faccenda… - Nucleic acids …, 2024 - academic.oup.com
Abstract The IUPHAR/BPS Guide to PHARMACOLOGY (GtoPdb; https://www.
guidetopharmacology. org) is an open-access, expert-curated, online database that …

[HTML][HTML] Trends and challenges in chemoinformatics research in Latin America

J Miranda-Salas, C Peña-Varas, IV Martínez… - Artificial Intelligence in …, 2023 - Elsevier
Chemoinformatics is an independent inter-discipline with a broad impact in drug design and
discovery, medicinal chemistry, biochemistry, analytical and organic chemistry, natural …

Map** the structure–activity landscape of non-canonical peptides with MAP4 fingerprinting

E López-López, O Robles, F Plisson… - Digital …, 2023 - pubs.rsc.org
Peptide structure–activity/property relationship (P-SA/PR) studies focus on understanding
how the structural variations of peptides influence their biological activities and other …

[HTML][HTML] Natural products subsets: Generation and characterization

AL Chávez-Hernández, JL Medina-Franco - Artificial Intelligence in the Life …, 2023 - Elsevier
Natural products are attractive for drug discovery applications because of their distinctive
chemical structures, such as an overall large fraction of sp 3 carbon atoms, chiral centers …

Protein Retrieval via Integrative Molecular Ensembles (PRIME) through extended similarity indices

L Chen, A Mondal, A Perez… - Journal of Chemical …, 2024 - ACS Publications
Molecular dynamics (MD) simulations are ideally suited to describe conformational
ensembles of biomolecules such as proteins and nucleic acids. Microsecond-long …

Hamiltonian diversity: effectively measuring molecular diversity by shortest Hamiltonian circuits

X Hu, G Liu, Q Yao, Y Zhao, H Zhang - Journal of Cheminformatics, 2024 - Springer
In recent years, significant advancements have been made in molecular generation
algorithms aimed at facilitating drug development, and molecular diversity holds paramount …

Yin-yang in drug discovery: rethinking de novo design and development of predictive models

AL Chávez-Hernández, E López-López… - Frontiers in Drug …, 2023 - frontiersin.org
Chemical and biological data are the cornerstone of modern drug discovery programs.
Finding qualitative yet better quantitative relationships between chemical structures and …

Toward quantitative models in safety assessment: a case study to show impact of dose–response inference on hERG inhibition models

F Melnikov, LT Anger, C Hasselgren - International Journal of Molecular …, 2022 - mdpi.com
Due to challenges with historical data and the diversity of assay formats, in silico models for
safety-related endpoints are often based on discretized data instead of the data on a natural …

ASER: Adapted squared error relevance for rare cases prediction in imbalanced regression

Y Kou, GH Fu - Journal of Chemometrics, 2023 - Wiley Online Library
Many real‐world data mining applications involve using imbalanced datasets to obtain
predictive models. Imbalanced data can hinder the model performance of learning …