Detecting positive selection in the genome
Population geneticists have long sought to understand the contribution of natural selection
to molecular evolution. A variety of approaches have been proposed that use population …
to molecular evolution. A variety of approaches have been proposed that use population …
Molecular population genetics
Molecular population genetics aims to explain genetic variation and molecular evolution
from population genetics principles. The field was born 50 years ago with the first measures …
from population genetics principles. The field was born 50 years ago with the first measures …
The population genetics of structural variants in grapevine domestication
Structural variants (SVs) are a largely unexplored feature of plant genomes. Little is known
about the type and size of SVs, their distribution among individuals and, especially, their …
about the type and size of SVs, their distribution among individuals and, especially, their …
Inference of distribution of fitness effects and proportion of adaptive substitutions from polymorphism data
The distribution of fitness effects (DFE) encompasses the fraction of deleterious, neutral, and
beneficial mutations. It conditions the evolutionary trajectory of populations, as well as the …
beneficial mutations. It conditions the evolutionary trajectory of populations, as well as the …
On the prospect of achieving accurate joint estimation of selection with population history
As both natural selection and population history can affect genome-wide patterns of
variation, disentangling the contributions of each has remained as a major challenge in …
variation, disentangling the contributions of each has remained as a major challenge in …
Ape origins of human malaria
PM Sharp, LJ Plenderleith… - Annual review of …, 2020 - annualreviews.org
African apes harbor at least twelve Plasmodium species, some of which have been a source
of human infection. It is now well established that Plasmodium falciparum emerged following …
of human infection. It is now well established that Plasmodium falciparum emerged following …
Inferring the Probability of the Derived vs. the Ancestral Allelic State at a Polymorphic Site
PD Keightley, BC Jackson - Genetics, 2018 - academic.oup.com
It is known that the allele ancestral to the variation at a polymorphic site cannot be assigned
with certainty, and that the most frequently used method to assign the ancestral state …
with certainty, and that the most frequently used method to assign the ancestral state …
Genome-wide maps of ribosomal occupancy provide insights into adaptive evolution and regulatory roles of uORFs during Drosophila development
Upstream open reading frames (uORFs) play important roles in regulating the main coding
DNA sequences (CDSs) via translational repression. Despite their prevalence in the …
DNA sequences (CDSs) via translational repression. Despite their prevalence in the …
Deleterious variants in Asian rice and the potential cost of domestication
Many SNPs are predicted to encode deleterious amino acid variants. These slightly
deleterious mutations can provide unique insights into population history, the dynamics of …
deleterious mutations can provide unique insights into population history, the dynamics of …
Evolutionary history of human Plasmodium vivax revealed by genome-wide analyses of related ape parasites
DE Loy, LJ Plenderleith… - Proceedings of the …, 2018 - National Acad Sciences
Wild-living African apes are endemically infected with parasites that are closely related to
human Plasmodium vivax, a leading cause of malaria outside Africa. This finding suggests …
human Plasmodium vivax, a leading cause of malaria outside Africa. This finding suggests …