Microbial diversity in extreme environments

WS Shu, LN Huang - Nature Reviews Microbiology, 2022 - nature.com
A wide array of microorganisms, including many novel, phylogenetically deeply rooted taxa,
survive and thrive in extreme environments. These unique and reduced-complexity …

Major new microbial groups expand diversity and alter our understanding of the tree of life

CJ Castelle, JF Banfield - Cell, 2018 - cell.com
The recent recovery of genomes for organisms from phyla with no isolated representative
(candidate phyla) via cultivation-independent genomics enabled delineation of major new …

Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major …

DW Waite, M Chuvochina, C Pelikan… - … of Systematic and …, 2020 - microbiologyresearch.org
The class Deltaproteobacteria comprises an ecologically and metabolically diverse group of
bacteria best known for dissimilatory sulphate reduction and predatory behaviour. Although …

Clades of huge phages from across Earth's ecosystems

B Al-Shayeb, R Sachdeva, LX Chen, F Ward, P Munk… - Nature, 2020 - nature.com
Bacteriophages typically have small genomes and depend on their bacterial hosts for
replication. Here we sequenced DNA from diverse ecosystems and found hundreds of …

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

K Anantharaman, CT Brown, LA Hug, I Sharon… - Nature …, 2016 - nature.com
The subterranean world hosts up to one-fifth of all biomass, including microbial communities
that drive transformations central to Earth's biogeochemical cycles. However, little is known …

Biosynthetic capacity, metabolic variety and unusual biology in the CPR and DPANN radiations

CJ Castelle, CT Brown, K Anantharaman… - Nature Reviews …, 2018 - nature.com
Candidate phyla radiation (CPR) bacteria and DPANN (an acronym of the names of the first
included phyla) archaea are massive radiations of organisms that are widely distributed …

Genome-resolved metagenomics reveals site-specific diversity of episymbiotic CPR bacteria and DPANN archaea in groundwater ecosystems

C He, R Keren, ML Whittaker, IF Farag, JA Doudna… - Nature …, 2021 - nature.com
Candidate phyla radiation (CPR) bacteria and DPANN archaea are unisolated, small-celled
symbionts that are often detected in groundwater. The effects of groundwater geochemistry …

Unusual biology across a group comprising more than 15% of domain Bacteria

CT Brown, LA Hug, BC Thomas, I Sharon, CJ Castelle… - Nature, 2015 - nature.com
A prominent feature of the bacterial domain is a radiation of major lineages that are defined
as candidate phyla because they lack isolated representatives. Bacteria from these phyla …

Genomic expansion of domain archaea highlights roles for organisms from new phyla in anaerobic carbon cycling

CJ Castelle, KC Wrighton, BC Thomas, LA Hug… - Current biology, 2015 - cell.com
Background Archaea represent a significant fraction of Earth's biodiversity, yet they remain
much less well understood than Bacteria. Gene surveys, a few metagenomic studies, and …

The fate of organic carbon in marine sediments-New insights from recent data and analysis

DE LaRowe, S Arndt, JA Bradley, ER Estes… - Earth-Science …, 2020 - Elsevier
Organic carbon in marine sediments is a critical component of the global carbon cycle, and
its degradation influences a wide range of phenomena, including the magnitude of carbon …