A review of large language models and autonomous agents in chemistry

MC Ramos, CJ Collison, AD White - Chemical Science, 2025 - pubs.rsc.org
Large language models (LLMs) have emerged as powerful tools in chemistry, significantly
impacting molecule design, property prediction, and synthesis optimization. This review …

Leveraging biomolecule and natural language through multi-modal learning: A survey

Q Pei, L Wu, K Gao, J Zhu, Y Wang, Z Wang… - arxiv preprint arxiv …, 2024 - arxiv.org
The integration of biomolecular modeling with natural language (BL) has emerged as a
promising interdisciplinary area at the intersection of artificial intelligence, chemistry and …

Exgc: Bridging efficiency and explainability in graph condensation

J Fang, X Li, Y Sui, Y Gao, G Zhang, K Wang… - Proceedings of the …, 2024 - dl.acm.org
Graph representation learning on vast datasets, like web data, has made significant strides.
However, the associated computational and storage overheads raise concerns. In sight of …

Prott3: Protein-to-text generation for text-based protein understanding

Z Liu, A Zhang, H Fei, E Zhang, X Wang… - arxiv preprint arxiv …, 2024 - arxiv.org
Language Models (LMs) excel in understanding textual descriptions of proteins, as evident
in biomedical question-answering tasks. However, their capability falters with raw protein …

Cat-gnn: Enhancing credit card fraud detection via causal temporal graph neural networks

Y Duan, G Zhang, S Wang, X Peng, W Ziqi… - arxiv preprint arxiv …, 2024 - arxiv.org
Credit card fraud poses a significant threat to the economy. While Graph Neural Network
(GNN)-based fraud detection methods perform well, they often overlook the causal effect of a …

ReactXT: Understanding Molecular" Reaction-ship" via Reaction-Contextualized Molecule-Text Pretraining

Z Liu, Y Shi, A Zhang, S Li, E Zhang, X Wang… - arxiv preprint arxiv …, 2024 - arxiv.org
Molecule-text modeling, which aims to facilitate molecule-relevant tasks with a textual
interface and textual knowledge, is an emerging research direction. Beyond single …

Automated construction of theme-specific knowledge graphs

L Ding, S Zhou, J **ao, J Han - arxiv preprint arxiv:2404.19146, 2024 - arxiv.org
Despite widespread applications of knowledge graphs (KGs) in various tasks such as
question answering and intelligent conversational systems, existing KGs face two major …

The Snowflake Hypothesis: Training and Powering GNN with One Node One Receptive Field

K Wang, G Li, S Wang, G Zhang, K Wang… - Proceedings of the 30th …, 2024 - dl.acm.org
Despite Graph Neural Networks (GNNs) demonstrating considerable promise in graph
representation learning tasks, GNNs predominantly face significant issues with overfitting …

Biomedgpt: An open multimodal large language model for biomedicine

Y Luo, J Zhang, S Fan, K Yang, M Hong… - IEEE Journal of …, 2024 - ieeexplore.ieee.org
Recent advances in large language models (LLMs) like ChatGPT have shed light on the
development of knowledgeable and versatile AI research assistants in various scientific …

Spatio-temporal fluid dynamics modeling via physical-awareness and parameter diffusion guidance

H Wu, F Xu, Y Duan, Z Niu, W Wang, G Lu… - arxiv preprint arxiv …, 2024 - arxiv.org
This paper proposes a two-stage framework named ST-PAD for spatio-temporal fluid
dynamics modeling in the field of earth sciences, aiming to achieve high-precision …