Best practices for analysing microbiomes
Complex microbial communities shape the dynamics of various environments, ranging from
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
the mammalian gastrointestinal tract to the soil. Advances in DNA sequencing technologies …
Correlation and association analyses in microbiome study integrating multiomics in health and disease
Y **a - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …
research fields, including microbiome and integrative multiomics studies. Correlation and …
Using MicrobiomeAnalyst for comprehensive statistical, functional, and meta-analysis of microbiome data
MicrobiomeAnalyst is an easy-to-use, web-based platform for comprehensive analysis of
common data outputs generated from current microbiome studies. It enables researchers …
common data outputs generated from current microbiome studies. It enables researchers …
Effects of microplastics and carbon nanotubes on soil geochemical properties and bacterial communities
Q Wang, X Feng, Y Liu, W Cui, Y Sun, S Zhang… - Journal of Hazardous …, 2022 - Elsevier
A 100-day soil incubation experiment was conducted to explore the effects of conventional
(high-density polyethylene, HDPE) and biodegradable (polylactic acid, PLA) microplastics …
(high-density polyethylene, HDPE) and biodegradable (polylactic acid, PLA) microplastics …
[HTML][HTML] MetaboAnalystR 3.0: toward an optimized workflow for global metabolomics
Liquid chromatography coupled to high-resolution mass spectrometry platforms are
increasingly employed to comprehensively measure metabolome changes in systems …
increasingly employed to comprehensively measure metabolome changes in systems …
Metagenomic insights into microbial community structure and metabolism in alpine permafrost on the Tibetan Plateau
L Kang, Y Song, R Mackelprang, D Zhang… - Nature …, 2024 - nature.com
Permafrost, characterized by its frozen soil, serves as a unique habitat for diverse
microorganisms. Understanding these microbial communities is crucial for predicting the …
microorganisms. Understanding these microbial communities is crucial for predicting the …
Distinct community structure and microbial functions of biofilms colonizing microplastics
L Miao, P Wang, J Hou, Y Yao, Z Liu, S Liu… - Science of the Total …, 2019 - Elsevier
Microplastics are frequently detected in freshwater environments, serving as a new factitious
substrate for colonization of biofilm-forming microorganisms. Distinct microbial assemblages …
substrate for colonization of biofilm-forming microorganisms. Distinct microbial assemblages …
Decoupling function and taxonomy in the global ocean microbiome
Microbial metabolism powers biogeochemical cycling in Earth's ecosystems. The taxonomic
composition of microbial communities varies substantially between environments, but the …
composition of microbial communities varies substantially between environments, but the …
[HTML][HTML] Intermittent fasting confers protection in CNS autoimmunity by altering the gut microbiota
Multiple sclerosis (MS) is more common in western countries with diet being a potential
contributing factor. Here we show that intermittent fasting (IF) ameliorated clinical course and …
contributing factor. Here we show that intermittent fasting (IF) ameliorated clinical course and …
ampvis2: an R package to analyse and visualise 16S rRNA amplicon data
Microbial community analysis using 16S rRNA gene amplicon sequencing is the backbone
of many microbial ecology studies. Several approaches and pipelines exist for processing …
of many microbial ecology studies. Several approaches and pipelines exist for processing …