Computational modeling of realistic cell membranes
Cell membranes contain a large variety of lipid types and are crowded with proteins,
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
endowing them with the plasticity needed to fulfill their key roles in cell functioning. The …
[HTML][HTML] Programming assembly of biomimetic exosomes: an emerging theranostic nanomedicine platform
X Xu, L Xu, C Wen, J **a, Y Zhang, Y Liang - Materials Today Bio, 2023 - Elsevier
Exosomes have emerged as a promising cell-free therapeutic approach. However,
challenges in large-scale production, quality control, and heterogeneity must be overcome …
challenges in large-scale production, quality control, and heterogeneity must be overcome …
GROMACS: fast, flexible, and free
This article describes the software suite GROMACS (Groningen MAchine for Chemical
Simulation) that was developed at the University of Groningen, The Netherlands, in the early …
Simulation) that was developed at the University of Groningen, The Netherlands, in the early …
Computational Lipidomics with insane: A Versatile Tool for Generating Custom Membranes for Molecular Simulations
For simulations of membranes and membrane proteins, the generation of the lipid bilayer is
a critical step in the setup of the system. Membranes comprising multiple components pose …
a critical step in the setup of the system. Membranes comprising multiple components pose …
Coarse grained model for semiquantitative lipid simulations
This paper describes the parametrization of a new coarse grained (CG) model for lipid and
surfactant systems. Reduction of the number of degrees of freedom together with the use of …
surfactant systems. Reduction of the number of degrees of freedom together with the use of …
[BOOK][B] Coarse-graining of condensed phase and biomolecular systems
GA Voth - 2008 - taylorfrancis.com
Exploring recent developments in the field, Coarse-Graining of Condensed Phase and
Biomolecular Systems examines systematic ways of constructing coarse-grained …
Biomolecular Systems examines systematic ways of constructing coarse-grained …
Dry Martini, a coarse-grained force field for lipid membrane simulations with implicit solvent
Coarse-grained (CG) models allow simulation of larger systems for longer times by
decreasing the number of degrees of freedom compared with all-atom models. Here we …
decreasing the number of degrees of freedom compared with all-atom models. Here we …
Simulation of pore formation in lipid bilayers by mechanical stress and electric fields
We describe computer simulations of pore formation and membrane rupture of phospholipid
bilayers under mechanical and electrical stress. On the nanosecond simulation time scale …
bilayers under mechanical and electrical stress. On the nanosecond simulation time scale …
Coarse grain models and the computer simulation of soft materials
This article presents a topical review of coarse grain simulation techniques. First, we
motivate these techniques with illustrative examples from biology and materials science …
motivate these techniques with illustrative examples from biology and materials science …
Multi-property fitting and parameterization of a coarse grained model for aqueous surfactants
A new systematic approach to build coarse-grained (CG) molecular models for
surfactants/water systems is proposed. A step-by-step approach using several molecular …
surfactants/water systems is proposed. A step-by-step approach using several molecular …