Objective review of de novo stand‐alone error correction methods for NGS data

AS Alic, D Ruzafa, J Dopazo… - Wiley Interdisciplinary …, 2016 - Wiley Online Library
The sequencing market has increased steadily over the last few years, with different
approaches to read DNA information prone to different types of errors. Multiple studies …

[PDF][PDF] RNA-Seq analysis in fruit science: a review

O Simsek, D Donmez, YA Kacar - Am. J. Plant Biol, 2017 - academia.edu
Fruit breeding is an ancient technology with dynamic current techniques and an exciting
future. There are a number of restraints to conventional fruit breeding which are especially …

A chromosome-level phased genome enabling allele-level studies in sweet orange: a case study on citrus Huanglongbing tolerance

B Wu, Q Yu, Z Deng, Y Duan, F Luo… - Horticulture …, 2023 - academic.oup.com
Sweet orange originated from the introgressive hybridizations of pummelo and mandarin
resulting in a highly heterozygous genome. How alleles from the two species cooperate in …

Expression and diversification analysis reveals transposable elements play important roles in the origin of L ycopersicon‐specific lnc RNA s in tomato

X Wang, G Ai, C Zhang, L Cui, J Wang, H Li… - New …, 2016 - Wiley Online Library
Long noncoding RNA s (lnc RNA s) regulate gene expression and biological processes.
With the development of high‐throughput RNA sequencing technology, lnc RNA s have …

The first molecular identification of an olive collection applying standard simple sequence repeats and novel expressed sequence tag markers

S Mousavi, R Mariotti, L Regni, L Nasini… - Frontiers in plant …, 2017 - frontiersin.org
Germplasm collections of tree crop species represent fundamental tools for conservation of
diversity and key steps for its characterization and evaluation. For the olive tree, several …

Genomic Survey, Transcriptome, and Metabolome Analysis of Apocynum venetum and Apocynum hendersonii to Reveal Major Flavonoid Biosynthesis Pathways

G Gao, P Chen, J Chen, K Chen, X Wang… - Metabolites, 2019 - mdpi.com
Apocynum plants, especially A. venetum and A. hendersonii, are rich in flavonoids. In the
present study, a whole genome survey of the two species was initially carried out to optimize …

Citrus genetics and breeding

J Cuenca, A Garcia-Lor, L Navarro, P Aleza - Advances in Plant Breeding …, 2018 - Springer
Citrus is one of the most important fruit crops worldwide. It is grown in more than 130
countries, mainly in tropical and subtropical areas. Sweet orange represents about 60% of …

Genome-wide identification, characterization, interaction network and expression profile of GRAS gene family in sweet orange (Citrus sinensis)

H Zhang, L Mi, L Xu, C Yu, C Li, C Chen - Scientific Reports, 2019 - nature.com
GRAS genes are suggested to be grouped into plant-specific transcriptional regulatory
families that have been reported to participate in multiple processes, including plant …

An RNA‐Seq‐based reference transcriptome for Citrus

J Terol, F Tadeo, D Ventimilla… - Plant biotechnology …, 2016 - Wiley Online Library
Previous RNA‐Seq studies in citrus have been focused on physiological processes relevant
to fruit quality and productivity of the major species, especially sweet orange. Less attention …

[HTML][HTML] Recombinant expression, characterization and phylogenetic studies of novels cystatins-like proteins of sweet orange (Citrus sinensis) and clementine (Citrus …

VK Schneider, TF da Silva Ferrara, SV Rocha… - International Journal of …, 2020 - Elsevier
Phytocystatins are plant cystatins that are related to several physiological processes
regulating endogenous cysteine proteases involved in seed development and germination …