The role of metadata in reproducible computational research

J Leipzig, D Nüst, CT Hoyt, K Ram, J Greenberg - Patterns, 2021 - cell.com
Reproducible computational research (RCR) is the keystone of the scientific method for in
silico analyses, packaging the transformation of raw data to published results. In addition to …

Theory and practice of data citation

G Silvello - Journal of the Association for Information Science …, 2018 - Wiley Online Library
Citations are the cornerstone of knowledge propagation and the primary means of
assessing the quality of research, as well as directing investments in science. Science is …

Open research knowledge graph: next generation infrastructure for semantic scholarly knowledge

MY Jaradeh, A Oelen, KE Farfar, M Prinz… - Proceedings of the 10th …, 2019 - dl.acm.org
Despite improved digital access to scholarly knowledge in recent decades, scholarly
communication remains exclusively document-based. In this form, scholarly knowledge is …

Towards a knowledge graph for science

S Auer, V Kovtun, M Prinz, A Kasprzik… - Proceedings of the 8th …, 2018 - dl.acm.org
The document-centric workflows in science have reached (or already exceeded) the limits of
adequacy. This is emphasized by recent discussions on the increasing proliferation of …

Solvent: A mixed initiative system for finding analogies between research papers

J Chan, JC Chang, T Hope, D Shahaf… - Proceedings of the ACM …, 2018 - dl.acm.org
Scientific discoveries are often driven by finding analogies in distant domains, but the
growing number of papers makes it difficult to find relevant ideas in a single discipline, let …

Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv

FZ Khan, S Soiland-Reyes, RO Sinnott, A Lonie… - …, 2019 - academic.oup.com
Background The automation of data analysis in the form of scientific workflows has become
a widely adopted practice in many fields of research. Computationally driven data-intensive …

Technical and social issues influencing the adoption of preprints in the life sciences

NC Penfold, JK Polka - PLoS genetics, 2020 - journals.plos.org
Preprints are gaining visibility in many fields. Thanks to the exponential growth in
submissions to bioRxiv, an online server for preprints in biology, versions of manuscripts …

[PDF][PDF] Contexts and contradictions: a roadmap for computational drug repurposing with knowledge inference

DN Sosa, RB Altman - Briefings in bioinformatics, 2022 - academic.oup.com
The cost of drug development continues to rise and may be prohibitive in cases of unmet
clinical need, particularly for rare diseases. Artificial intelligence-based methods are …

[PDF][PDF] Biomedical text mining for research rigor and integrity: tasks, challenges, directions

H Kilicoglu - Briefings in bioinformatics, 2018 - academic.oup.com
An estimated quarter of a trillion US dollars is invested in the biomedical research enterprise
annually. There is growing alarm that a significant portion of this investment is wasted …

Why it takes a village to manage and share data

CL Borgman, PE Bourne - arxiv preprint arxiv:2109.01694, 2021 - arxiv.org
Implementation plans for the National Institutes of Health policy for data management and
sharing, which takes effect in 2023, provide an opportunity to reflect on the stakeholders …