Pfam, available via servers in the UK (http://pfam. sanger. ac. uk/) and the USA (http://pfam.
janelia. org/), is a widely used database of protein families, containing 14 831 manually …

The task of eukaryotic genome annotation remains challenging. Only a few genomes could
serve as standards of annotation achieved through a tremendous investment of human …

Superoxide is among the most abundant reactive oxygen species (ROS) produced by the
mitochondria, and is involved in cellular signaling pathways. Superoxide and other ROS can …

Green plants (Viridiplantae) include around 450,000–500,000 species, of great diversity and
have important roles in terrestrial and aquatic ecosystems. Here, as part of the One …

Motivation Protein-to-genome alignment is critical to annotating genes in non-model
organisms. While there are a few tools for this purpose, all of them were developed over 10 …

We elucidate grapevine evolution and domestication histories with 3525 cultivated and wild
accessions worldwide. In the Pleistocene, harsh climate drove the separation of wild grape …

Pearl millet is an important cereal crop worldwide and shows superior heat tolerance. Here,
we developed a graph-based pan-genome by assembling ten chromosomal genomes with …

Mitochondrial genome (mitogenome) plays important roles in evolutionary and ecological
studies. It becomes routine to utilize multiple genes on mitogenome or the entire …

INTRODUCTION Fusarium head blight (FHB) is a fungal disease that devastates global
wheat production, with losses of billions of dollars annually. Unlike foliar diseases, FHB …

Allotetraploid cotton is an economically important natural-fiber-producing crop worldwide.
After polyploidization, Gossypium hirsutum L. evolved to produce a higher fiber yield and to …