Two-dimensional gel electrophoresis in proteomics: Past, present and future

T Rabilloud, M Chevallet, S Luche, C Lelong - Journal of proteomics, 2010 - Elsevier
Two-dimensional gel electrophoresis has been instrumental in the birth and developments
of proteomics, although it is no longer the exclusive separation tool used in the field of …

The state of the art in the analysis of two-dimensional gel electrophoresis images

M Berth, FM Moser, M Kolbe, J Bernhardt - Applied microbiology and …, 2007 - Springer
Software-based image analysis is a crucial step in the biological interpretation of two-
dimensional gel electrophoresis experiments. Recent significant advances in image …

Small cationic antimicrobial peptides delocalize peripheral membrane proteins

M Wenzel, AI Chiriac, A Otto, D Zweytick, C May… - Proceedings of the …, 2014 - pnas.org
Short antimicrobial peptides rich in arginine (R) and tryptophan (W) interact with
membranes. To learn how this interaction leads to bacterial death, we characterized the …

A stress response that monitors and regulates mRNA structure is central to cold shock adaptation

Y Zhang, DH Burkhardt, S Rouskin, GW Li… - Molecular cell, 2018 - cell.com
Temperature influences the structural and functional properties of cellular components,
necessitating stress responses to restore homeostasis following temperature shift. Whereas …

A marine bacterial enzymatic cascade degrades the algal polysaccharide ulvan

L Reisky, A Prechoux, MK Zühlke, M Bäumgen… - Nature chemical …, 2019 - nature.com
Marine seaweeds increasingly grow into extensive algal blooms, which are detrimental to
coastal ecosystems, tourism and aquaculture. However, algal biomass is also emerging as a …

Genome-scale reconstruction of metabolic network in Bacillus subtilis based on high-throughput phenoty** and gene essentiality data

YK Oh, BO Palsson, SM Park, CH Schilling… - Journal of Biological …, 2007 - jbc.org
In this report, a genome-scale reconstruction of Bacillus subtilis metabolism and its iterative
development based on the combination of genomic, biochemical, and physiological …

Anaerobic Gene Expression in Staphylococcus aureus

S Fuchs, J Pané-Farré, C Kohler, M Hecker… - Journal of …, 2007 - journals.asm.org
An investigation of gene expression in Staphylococcus aureus after a switch from aerobic to
anaerobic growth was initiated by using the proteomic and transcriptomic approaches. In the …

Functional characterization of polysaccharide utilization loci in the marine Bacteroidetes 'Gramella forsetii' KT0803

A Kabisch, A Otto, S König, D Becher… - The ISME …, 2014 - academic.oup.com
Members of the phylum Bacteroidetes are abundant in many marine ecosystems and are
known to have a pivotal role in the mineralization of complex organic substrates such as …

The extracellular matrix of Staphylococcus aureus biofilms comprises cytoplasmic proteins that associate with the cell surface in response to decreasing pH

L Foulston, AKW Elsholz, AS DeFrancesco, R Losick - MBio, 2014 - journals.asm.org
Biofilm formation by Staphylococcus aureus involves the formation of an extracellular matrix,
but the composition of this matrix has been uncertain. Here we report that the matrix is …

[HTML][HTML] Bacterial proteins with cleaved or uncleaved signal peptides of the general secretory pathway

GA De Souza, NA Leversen, H Målen, HG Wiker - Journal of proteomics, 2011 - Elsevier
Correct protein compartmentalization is a key step for molecular function and cell viability,
and this is especially true for membrane and externalized proteins of bacteria. Recent …