Perspective on the current state-of-the-art of quantum computing for drug discovery applications

NS Blunt, J Camps, O Crawford, R Izsák… - Journal of Chemical …, 2022 - ACS Publications
Computational chemistry is an essential tool in the pharmaceutical industry. Quantum
computing is a fast evolving technology that promises to completely shift the computational …

Universal QM/MM approaches for general nanoscale applications

KS Csizi, M Reiher - Wiley Interdisciplinary Reviews …, 2023 - Wiley Online Library
Quantum mechanics/molecular mechanics (QM/MM) hybrid models allow one to address
chemical phenomena in complex molecular environments. Whereas this modeling approach …

Polarisable force fields: what do they add in biomolecular simulations?

VSS Inakollu, DP Geerke, CN Rowley, H Yu - Current Opinion in Structural …, 2020 - Elsevier
Highlights•Induced polarisation is an essential component of biomolecular interactions like
cation-pi, hydrogen bonding, and ionic interactions.•Advances in simulation algorithms and …

Evaluating classical force fields against experimental cross-solvation free energies

S Kashefolgheta, MP Oliveira, SR Rieder… - Journal of chemical …, 2020 - ACS Publications
Experimental solvation free energies are nowadays commonly included as target properties
in the validation and sometimes even in the calibration of condensed-phase force fields …

van der Waals Radii of Free and Bonded Atoms from Hydrogen (Z= 1) to Oganesson (Z= 118)

J Charry, A Tkatchenko - Journal of Chemical Theory and …, 2024 - ACS Publications
Reliable numerical values of van der Waals (vdW) radii are required for constructing
empirical force fields, vdW-inclusive density functional, and quantum-chemical methods, as …

Theoretical study on spectral and optical properties of essential amino acids: a comparative study

S Lakhera, M Rana, K Devlal - Optical and Quantum Electronics, 2022 - Springer
In the present work, a theoretical study has been performed targeting essential amino acids
(EAA) Histidine, Isoleucine, Leucine, Lysine, Methionine, Phenylalanine, Threonine …

Systematic optimization of a fragment-based force field against experimental pure-liquid properties considering large compound families: Application to saturated …

MP Oliveira, M Andrey, SR Rieder, L Kern… - Journal of chemical …, 2020 - ACS Publications
Direct optimization against experimental condensed-phase properties concerning small
organic molecules still represents the most reliable way to calibrate the empirical …

ICHOR: a modern pipeline for producing Gaussian process regression models for atomistic simulations

MJ Burn, PLA Popelier - Materials Advances, 2022 - pubs.rsc.org
Current practical use of machine learning is more involved than model architecture and the
optimisation technique itself. It is very important that the modern machine learning method is …

Effects of framework flexibility on the adsorption and diffusion of aromatics in MFI-type zeolites

S Caro-Ortiz, E Zuidema, M Rigutto… - The Journal of …, 2020 - ACS Publications
We systematically study how the degree of framework flexibility affects the adsorption and
diffusion of aromatics in MFI-type zeolites as computed by Monte Carlo simulations. It is …

A collection of forcefield precursors for metal–organic frameworks

T Chen, TA Manz - RSC advances, 2019 - pubs.rsc.org
A host of important performance properties for metal–organic frameworks (MOFs) and other
complex materials can be calculated by modeling statistical ensembles. The principle …