Perspective on the current state-of-the-art of quantum computing for drug discovery applications
Computational chemistry is an essential tool in the pharmaceutical industry. Quantum
computing is a fast evolving technology that promises to completely shift the computational …
computing is a fast evolving technology that promises to completely shift the computational …
Universal QM/MM approaches for general nanoscale applications
Quantum mechanics/molecular mechanics (QM/MM) hybrid models allow one to address
chemical phenomena in complex molecular environments. Whereas this modeling approach …
chemical phenomena in complex molecular environments. Whereas this modeling approach …
Polarisable force fields: what do they add in biomolecular simulations?
Highlights•Induced polarisation is an essential component of biomolecular interactions like
cation-pi, hydrogen bonding, and ionic interactions.•Advances in simulation algorithms and …
cation-pi, hydrogen bonding, and ionic interactions.•Advances in simulation algorithms and …
Evaluating classical force fields against experimental cross-solvation free energies
S Kashefolgheta, MP Oliveira, SR Rieder… - Journal of chemical …, 2020 - ACS Publications
Experimental solvation free energies are nowadays commonly included as target properties
in the validation and sometimes even in the calibration of condensed-phase force fields …
in the validation and sometimes even in the calibration of condensed-phase force fields …
van der Waals Radii of Free and Bonded Atoms from Hydrogen (Z= 1) to Oganesson (Z= 118)
Reliable numerical values of van der Waals (vdW) radii are required for constructing
empirical force fields, vdW-inclusive density functional, and quantum-chemical methods, as …
empirical force fields, vdW-inclusive density functional, and quantum-chemical methods, as …
Theoretical study on spectral and optical properties of essential amino acids: a comparative study
In the present work, a theoretical study has been performed targeting essential amino acids
(EAA) Histidine, Isoleucine, Leucine, Lysine, Methionine, Phenylalanine, Threonine …
(EAA) Histidine, Isoleucine, Leucine, Lysine, Methionine, Phenylalanine, Threonine …
Systematic optimization of a fragment-based force field against experimental pure-liquid properties considering large compound families: Application to saturated …
MP Oliveira, M Andrey, SR Rieder, L Kern… - Journal of chemical …, 2020 - ACS Publications
Direct optimization against experimental condensed-phase properties concerning small
organic molecules still represents the most reliable way to calibrate the empirical …
organic molecules still represents the most reliable way to calibrate the empirical …
ICHOR: a modern pipeline for producing Gaussian process regression models for atomistic simulations
Current practical use of machine learning is more involved than model architecture and the
optimisation technique itself. It is very important that the modern machine learning method is …
optimisation technique itself. It is very important that the modern machine learning method is …
Effects of framework flexibility on the adsorption and diffusion of aromatics in MFI-type zeolites
S Caro-Ortiz, E Zuidema, M Rigutto… - The Journal of …, 2020 - ACS Publications
We systematically study how the degree of framework flexibility affects the adsorption and
diffusion of aromatics in MFI-type zeolites as computed by Monte Carlo simulations. It is …
diffusion of aromatics in MFI-type zeolites as computed by Monte Carlo simulations. It is …
A collection of forcefield precursors for metal–organic frameworks
A host of important performance properties for metal–organic frameworks (MOFs) and other
complex materials can be calculated by modeling statistical ensembles. The principle …
complex materials can be calculated by modeling statistical ensembles. The principle …