PseKNC: a flexible web server for generating pseudo K-tuple nucleotide composition
The pseudo oligonucleotide composition, or pseudo K-tuple nucleotide composition
(PseKNC), can be used to represent a DNA or RNA sequence with a discrete model or …
(PseKNC), can be used to represent a DNA or RNA sequence with a discrete model or …
[HTML][HTML] Coarse-grained modeling of RNA 3D structure
Functional RNA molecules depend on three-dimensional (3D) structures to carry out their
tasks within the cell. Understanding how these molecules interact to carry out their biological …
tasks within the cell. Understanding how these molecules interact to carry out their biological …
Probing allostery through DNA
Allostery is well documented for proteins but less recognized for DNA-protein interactions.
Here, we report that specific binding of a protein on DNA is substantially stabilized or …
Here, we report that specific binding of a protein on DNA is substantially stabilized or …
3D-DART: a DNA structure modelling server
There is a growing interest in structural studies of DNA by both experimental and
computational approaches. Often, 3D-structural models of DNA are required, for instance, to …
computational approaches. Often, 3D-structural models of DNA are required, for instance, to …
Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon
Z Cheng, F Dong, T Langdon, S Ouyang… - The Plant …, 2002 - academic.oup.com
The centromere of eukaryotic chromosomes is essential for the faithful segregation and
inheritance of genetic information. In the majority of eukaryotic species, centromeres are …
inheritance of genetic information. In the majority of eukaryotic species, centromeres are …
DNA helix: the importance of being GC‐rich
AE Vinogradov - Nucleic acids research, 2003 - academic.oup.com
A new explanation for the emergence of heavy (GC‐rich) isochores is proposed, based on
the study of thermostability, bendability, ability to B–Z transition and curvature of the DNA …
the study of thermostability, bendability, ability to B–Z transition and curvature of the DNA …
DNA basepair step deformability inferred from molecular dynamics simulations
The sequence-dependent DNA deformability at the basepair step level was investigated
using large-scale atomic resolution molecular dynamics simulation of two 18-bp DNA …
using large-scale atomic resolution molecular dynamics simulation of two 18-bp DNA …
New anticancer potential Pt complex with tertamyl dithiocarbamate ligand: Synthesis, DNA targeting behavior, molecular dynamic, and biological activity
ME Moghadam, M Rezaeisadat… - Journal of Molecular …, 2023 - Elsevier
In this research, a new platinum complex,[Pt (phen)(tertamyl. dtc)] NO 3, where (phen) is 1,
10-phenanthroline and (tertamyl. dtc) is the tertamyl-dithiocarbamate ligand, has been …
10-phenanthroline and (tertamyl. dtc) is the tertamyl-dithiocarbamate ligand, has been …
Weak palindromic consensus sequences are a common feature found at the integration target sites of many retroviruses
X Wu, Y Li, B Crise, SM Burgess, DJ Munroe - Journal of virology, 2005 - Am Soc Microbiol
Integration into the host genome is one of the hallmarks of the retroviral life cycle and is
catalyzed by virus-encoded integrases. While integrase has strict sequence requirements for …
catalyzed by virus-encoded integrases. While integrase has strict sequence requirements for …
Spatial contacts and nucleosome step movements induced by the NURF chromatin remodeling complex
The nucleosome remodeling factor NURF is a four-subunit, ISWI-containing chromatin
remodeling complex that catalyzes nucleosome sliding in an ATP-dependent fashion …
remodeling complex that catalyzes nucleosome sliding in an ATP-dependent fashion …