Transient non-specific DNA binding dominates the target search of bacterial DNA-binding proteins

M Stracy, J Schweizer, DJ Sherratt, AN Kapanidis… - Molecular cell, 2021 - cell.com
Despite their diverse biochemical characteristics and functions, all DNA-binding proteins
share the ability to accurately locate their target sites among the vast excess of non-target …

Choosing the right label for single-molecule tracking in live bacteria: side-by-side comparison of photoactivatable fluorescent protein and Halo tag dyes

N Banaz, J Mäkelä, S Uphoff - Journal of physics D: Applied …, 2018 - iopscience.iop.org
Visualizing and quantifying molecular motion and interactions inside living cells provides
crucial insight into the mechanisms underlying cell function. This has been achieved by …

Recurrent mismatch binding by MutS mobile clamps on DNA localizes repair complexes nearby

P Hao, SJ LeBlanc, BC Case, TC Elston… - Proceedings of the …, 2020 - pnas.org
DNA mismatch repair (MMR), the guardian of the genome, commences when MutS identifies
a mismatch and recruits MutL to nick the error-containing strand, allowing excision and DNA …

[HTML][HTML] Concise Overview of Methodologies Employed in the Study of Bacterial DNA Replication

M Maciąg-Dorszyńska… - International …, 2025 - pmc.ncbi.nlm.nih.gov
DNA replication is a fundamental process in the cell on which the functioning of the entire
cell as well as the maintenance of the entire species depends. This process is synchronized …

Novel organophosphorus aminopyrimidines as unique structural DNA-targeting membrane active inhibitors towards drug-resistant methicillin-resistant …

D Li, RRY Bheemanaboina, N Battini… - …, 2018 - pubs.rsc.org
A series of novel unique structural organophosphorus aminopyrimidines were developed as
potential DNA-targeting membrane active inhibitors through an efficient one-pot procedure …

Using a safe and effective fixative to improve the immunofluorescence staining of bacteria

J Sun, Y Mao, L Cui, Y Cao, Z Li, M Ling… - … and Applications in …, 2021 - iopscience.iop.org
The emerging and development of green chemistry has once again drawn the researchers'
attention to eliminating the use and generation of hazardous materials. Here we report the …

[HTML][HTML] Dimerization of iLID optogenetic proteins observed using 3D single-molecule tracking in live E. coli

AM Achimovich, T Yan, A Gahlmann - Biophysical Journal, 2023 - cell.com
Abstract 3D single-molecule tracking microscopy has enabled measurements of protein
diffusion in living cells, offering information about protein dynamics and cellular …

Super-resolution microscopy and tracking of DNA-binding proteins in bacterial cells

CJ Cassaro, S Uphoff - Chromosome Architecture: Methods and Protocols, 2022 - Springer
The ability to detect individual fluorescent molecules inside living cells has enabled a range
of powerful microscopy techniques that resolve biological processes on the molecular scale …

Single-Molecule Fluorescence Imaging of DNA Replication Stalling at Sites of Nucleoprotein Complexes

KS Whinn, N Sharma, AM van Oijen… - Single Molecule Analysis …, 2023 - Springer
DNA replication in cells occurs on crowded and often damaged template DNA, forming
potentially deleterious roadblocks to the progressing replication fork. Numerous tools have …

The mismatch repair system (mutS and mutL) in Acinetobacter baylyi ADP1

H Zhou, L Zhang, Q Xu, L Zhang, Y Yu, X Hua - BMC microbiology, 2020 - Springer
Background Acinetobacter baylyi ADP1 is an ideal bacterial strain for high-throughput
genetic analysis as the bacterium is naturally transformable. Thus, ADP1 can be used to …