Iron–sulfur clusters in nucleic acid metabolism: Varying roles of ancient cofactors

Y Khodour, LS Kaguni, J Stiban - The Enzymes, 2019 - Elsevier
Despite their relative simplicity, iron–sulfur clusters have been omnipresent as cofactors in
myriad cellular processes such as oxidative phosphorylation and other respiratory …

Bacterial-artificial-chromosome-based genome editing methods and the applications in herpesvirus research

M Hao, J Tang, S Ge, T Li, N **a - Microorganisms, 2023 - mdpi.com
Herpesviruses are major pathogens that infect humans and animals. Manipulating the large
genome is critical for exploring the function of specific genes and studying the pathogenesis …

How does a helicase unwind DNA? Insights from RecBCD helicase

TM Lohman, NT Fazio - Bioessays, 2018 - Wiley Online Library
DNA helicases are a class of molecular motors that catalyze processive unwinding of double
stranded DNA. In spite of much study, we know relatively little about the mechanisms by …

Review of DNA repair enzymes in bacteria: With a major focus on AddAB and RecBCD

BB Wang, JZ Xu, F Zhang, S Liu, J Liu, WG Zhang - DNA repair, 2022 - Elsevier
DNA recombination repair systems are essential for organisms to maintain genomic stability.
In recent years, we have improved our understanding of the mechanisms of RecBCD/AddAB …

Heterogeneity in E. coli RecBCD helicase-DNA binding and base pair melting

L Hao, R Zhang, TM Lohman - Journal of molecular biology, 2021 - Elsevier
E. coli RecBCD, a helicase/nuclease involved in double stranded (ds) DNA break repair,
binds to a dsDNA end and melts out several DNA base pairs (bp) using only its binding free …

Homologous recombination mediated by the mycobacterial AdnAB helicase without end resection by the AdnAB nucleases

R Gupta, MC Unciuleac, S Shuman… - Nucleic acids …, 2017 - academic.oup.com
Current models of bacterial homologous recombination (HR) posit that extensive resection
of a DNA double-strand break (DSB) by a multisubunit helicase–nuclease machine (eg …

RecBCD enzyme “Chi recognition” mutants recognize Chi recombination hotspots in the right DNA context

SK Amundsen, JW Sharp, GR Smith - Genetics, 2016 - academic.oup.com
RecBCD enzyme is a complex, three-subunit protein machine essential for the major
pathway of DNA double-strand break repair and homologous recombination in Escherichia …

Global analysis of double-strand break processing reveals in vivo properties of the helicase-nuclease complex AddAB

A Badrinarayanan, TBK Le, JH Spille, II Cisse… - PLoS …, 2017 - journals.plos.org
In bacteria, double-strand break (DSB) repair via homologous recombination is thought to
be initiated through the bi-directional degradation and resection of DNA ends by a helicase …

Distribution of RecBCD and AddAB recombination-associated genes among bacteria in 33 phyla

D Gurung, RM Blumenthal - Microbiology, 2020 - microbiologyresearch.org
Homologous recombination plays key roles in fundamental processes such as recovery from
DNA damage and in bacterial horizontal gene transfer, yet there are still open questions …

Branched DNA Processing by a Thermostable CAS-Cas4 from Thermococcus onnurineus: Expanding Biochemical Landscape of Nuclease Activity

M Jain, AK Pattnayak, S Aggarwal, P Rai… - bioRxiv, 2024 - biorxiv.org
The adaptive immune function of CRISPR-Cas systems in bacteria and archaea is mediated
through CRISPR-Associated Proteins (Cas). The adaptation module, typically involving …