[HTML][HTML] Current status and potential of genomic selection to improve selective breeding in the main aquaculture species of International Council for the Exploration of …

P Boudry, F Allal, ML Aslam, L Bargelloni, TP Bean… - Aquaculture …, 2021 - Elsevier
Selective breeding has been successfully applied to improve profitability and sustainability
in numerous aquatic species. Recent developments of high throughput genoty** …

[HTML][HTML] Advancing fish breeding in aquaculture through genome functional annotation

IA Johnston, MP Kent, P Boudinot, M Looseley… - Aquaculture, 2024 - Elsevier
Genomics is increasingly applied in breeding programmes for farmed fish and shellfish
species around the world. However, current applications do not include information on …

Whole genome resequencing identifies local adaptation associated with environmental variation for redband trout

KR Andrews, T Seaborn, JP Egan… - Molecular …, 2023 - Wiley Online Library
Aquatic ectotherms are predicted to harbour genomic signals of local adaptation resulting
from selective pressures driven by the strong influence of climate conditions on body …

PacBio Iso-Seq improves the rainbow trout genome annotation and identifies alternative splicing associated with economically important phenotypes

A Ali, GH Thorgaard, M Salem - Frontiers in Genetics, 2021 - frontiersin.org
Rainbow trout is an important model organism that has received concerted international
efforts to study the transcriptome. For this purpose, short-read sequencing has been …

Accurate genotype imputation from low-coverage whole-genome sequencing data of rainbow trout

S Liu, KE Martin, WM Snelling, R Long… - G3: Genes …, 2024 - academic.oup.com
With the rapid and significant cost reduction of next-generation sequencing, low-coverage
whole-genome sequencing (lcWGS), followed by genotype imputation, is becoming a cost …

Genome-wide association study and genomic prediction of tolerance to acute hypoxia in rainbow trout

M Prchal, J D'Ambrosio, H Lagarde, D Lallias, P Patrice… - Aquaculture, 2023 - Elsevier
Hypoxia is one of the major threats to the aquaculture sector resulting in substantial
economic losses to the fish farmers. Thus, tolerance to hypoxia is of high economic interest …

Application of second-generation sequencing (SGS) and third generation sequencing (TGS) in aquaculture breeding program

LL Wong, SA Razali, ZM Deris, M Danish-Daniel… - Aquaculture, 2022 - Elsevier
High-throughput sequencing technologies have expanded gene-based to genome-wide
research in aquaculture species. Several techniques adopting the Second Generation …

A homology guide for Pacific salmon genus Oncorhynchus resolves patterns of ohnolog retention, resolution and local adaptation following the salmonid‐specific …

B Dimos, M Phelps - Ecology and Evolution, 2023 - Wiley Online Library
Salmonid fishes have emerged as a tractable model to study whole‐genome duplications
(WGDs) as this group has undergone four rounds of WGDs. While most of the salmonid …

The pink salmon genome: Uncovering the genomic consequences of a two-year life cycle

KA Christensen, EB Rondeau, D Sakhrani, CA Biagi… - PLoS …, 2021 - journals.plos.org
Pink salmon (Oncorhynchus gorbuscha) adults are the smallest of the five Pacific salmon
native to the western Pacific Ocean. Pink salmon are also the most abundant of these …

Genetic architecture of acute hyperthermia resistance in juvenile rainbow trout (Oncorhynchusmykiss) and genetic correlations with production traits

H Lagarde, D Lallias, P Patrice, A Dehaullon… - Genetics Selection …, 2023 - Springer
Background Selective breeding is a promising solution to reduce the vulnerability of fish
farms to heat waves, which are predicted to increase in intensity and frequency. However …