Genomics and the future of conservation genetics

FW Allendorf, PA Hohenlohe, G Luikart - Nature reviews genetics, 2010 - nature.com
We will soon have complete genome sequences from thousands of species, as well as from
many individuals within species. This coming explosion of information will transform our …

Applications of next-generation sequencing to phylogeography and phylogenetics

JE McCormack, SM Hird, AJ Zellmer… - Molecular phylogenetics …, 2013 - Elsevier
This is a time of unprecedented transition in DNA sequencing technologies. Next-generation
sequencing (NGS) clearly holds promise for fast and cost-effective generation of multilocus …

Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits

L Chen, Q Qiu, YU Jiang, K Wang, Z Lin, Z Li, F Bibi… - Science, 2019 - science.org
INTRODUCTION The ruminants are one of the most successful mammalian lineages,
exhibiting extensive morphological and ecological diversity and containing several key …

Worldwide patterns of ancestry, divergence, and admixture in domesticated cattle

JE Decker, SD McKay, MM Rolf, JW Kim… - PLoS …, 2014 - journals.plos.org
The domestication and development of cattle has considerably impacted human societies,
but the histories of cattle breeds and populations have been poorly understood especially …

Pervasive introgression facilitated domestication and adaptation in the Bos species complex

DD Wu, XD Ding, S Wang, JM Wójcik… - Nature ecology & …, 2018 - nature.com
Species of the Bos genus, including taurine cattle, zebu, gayal, gaur, banteng, yak, wisent
and bison, have been domesticated at least four times and have been an important source …

Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae)

G Li, BW Davis, E Eizirik, WJ Murphy - Genome research, 2016 - genome.cshlp.org
Inter-species hybridization has been recently recognized as potentially common in wild
animals, but the extent to which it shapes modern genomes is still poorly understood …

Time‐dependent rates of molecular evolution

SYW Ho, R Lanfear, L Bromham, MJ Phillips… - Molecular …, 2011 - Wiley Online Library
For over half a century, it has been known that the rate of morphological evolution appears
to vary with the time frame of measurement. Rates of microevolutionary change, measured …

Domestication of cattle: Two or three events?

D Pitt, N Sevane, EL Nicolazzi… - Evolutionary …, 2019 - Wiley Online Library
Cattle have been invaluable for the transition of human society from nomadic hunter‐
gatherers to sedentary farming communities throughout much of Europe, Asia and Africa …

The future of ancient DNA: Technical advances and conceptual shifts

M Hofreiter, JLA Paijmans, H Goodchild… - …, 2015 - Wiley Online Library
Technological innovations such as next generation sequencing and DNA hybridisation
enrichment have resulted in multi‐fold increases in both the quantity of ancient DNA …

Phylogenetic analysis at deep timescales: unreliable gene trees, bypassed hidden support, and the coalescence/concatalescence conundrum

J Gatesy, MS Springer - Molecular phylogenetics and evolution, 2014 - Elsevier
Large datasets are required to solve difficult phylogenetic problems that are deep in the Tree
of Life. Currently, two divergent systematic methods are commonly applied to such datasets …