Molecular phylogenetics: principles and practice
Phylogenies are important for addressing various biological questions such as relationships
among species or genes, the origin and spread of viral infection and the demographic …
among species or genes, the origin and spread of viral infection and the demographic …
PAML 4: phylogenetic analysis by maximum likelihood
Z Yang - Molecular biology and evolution, 2007 - academic.oup.com
Abstract paml, currently in version 4, is a package of programs for phylogenetic analyses of
DNA and protein sequences using maximum likelihood (ML). The programs may be used to …
DNA and protein sequences using maximum likelihood (ML). The programs may be used to …
Model selection may not be a mandatory step for phylogeny reconstruction
Determining the most suitable model for phylogeny reconstruction constitutes a fundamental
step in numerous evolutionary studies. Over the years, various criteria for model selection …
step in numerous evolutionary studies. Over the years, various criteria for model selection …
A species-level phylogeny of extant snakes with description of a new colubrid subfamily and genus
Background With over 3,500 species encompassing a diverse range of morphologies and
ecologies, snakes make up 36% of squamate diversity. Despite several attempts at …
ecologies, snakes make up 36% of squamate diversity. Despite several attempts at …
[PDF][PDF] Mutation rates and selection on synonymous mutations in SARS-CoV-2
The COVID-19 pandemic has seen an unprecedented response from the sequencing
community. Leveraging the sequence data from more than 140,000 SARS-CoV-2 genomes …
community. Leveraging the sequence data from more than 140,000 SARS-CoV-2 genomes …
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
The increase in the number of large data sets and the complexity of current probabilistic
sequence evolution models necessitates fast and reliable phylogeny reconstruction …
sequence evolution models necessitates fast and reliable phylogeny reconstruction …
Initial sequencing and comparative analysis of the mouse genome
European Bioinformatics Institute: Birney Ewan 3 … - Nature, 2002 - nature.com
The sequence of the mouse genome is a key informational tool for understanding the
contents of the human genome and a key experimental tool for biomedical research. Here …
contents of the human genome and a key experimental tool for biomedical research. Here …
Resolution of the early placental mammal radiation using Bayesian phylogenetics
Molecular phylogenetic studies have resolved placental mammals into four major groups,
but have not established the full hierarchy of interordinal relationships, including the position …
but have not established the full hierarchy of interordinal relationships, including the position …
[ΒΙΒΛΙΟ][B] Evolution: Probleme—Themen—Fragen
M Ridley - 2013 - books.google.com
Beim Studium der jüngeren Kontroversen über den Darwinismus fiel mir wiederholt auf, das
sie falsche Darstellungen enthielten, so als würde es sich um irgendetwas Umfassenderes …
sie falsche Darstellungen enthielten, so als würde es sich um irgendetwas Umfassenderes …
[ΒΙΒΛΙΟ][B] Computational molecular evolution
Z Yang - 2006 - books.google.com
The field of molecular evolution has experienced explosive growth in recent years due to the
rapid accumulation of genetic sequence data, continuous improvements to computer …
rapid accumulation of genetic sequence data, continuous improvements to computer …