The R language: an engine for bioinformatics and data science

FM Giorgi, C Ceraolo, D Mercatelli - Life, 2022 - mdpi.com
The R programming language is approaching its 30th birthday, and in the last three decades
it has achieved a prominent role in statistics, bioinformatics, and data science in general. It …

Bioinformatics and machine learning methodologies to identify the effects of central nervous system disorders on glioblastoma progression

MH Rahman, HK Rana, S Peng, X Hu… - Briefings in …, 2021 - academic.oup.com
Glioblastoma (GBM) is a common malignant brain tumor which often presents as a
comorbidity with central nervous system (CNS) disorders. Both CNS disorders and GBM …

An SHR–SCR module specifies legume cortical cell fate to enable nodulation

W Dong, Y Zhu, H Chang, C Wang, J Yang, J Shi… - Nature, 2021 - nature.com
Legumes, unlike other plants, have the ability to establish symbiosis with nitrogen-fixing
rhizobia. It has been theorized that a unique property of legume root cortical cells enabled …

Polystyrene nanoplastic induces oxidative stress, immune defense, and glycometabolism change in Daphnia pulex: Application of transcriptome profiling in risk …

Z Liu, Y Li, E Pérez, Q Jiang, Q Chen, Y Jiao… - Journal of Hazardous …, 2021 - Elsevier
Aquatic environments are generally contaminated with nanoplastic material. As a result,
molecular mechanisms for sensitive species like Daphnia are needed, given that …

[HTML][HTML] Immune signature-based subtypes of cervical squamous cell carcinoma tightly associated with human papillomavirus type 16 expression, molecular features …

X Lu, L Jiang, L Zhang, Y Zhu, W Hu, J Wang, X Ruan… - Neoplasia, 2019 - Elsevier
Substantial heterogeneity exists within cervical cancer that is generally infected by human
papillomavirus (HPV). However, the most common histological subtype of cervical cancer …

Expansion of GGC repeat in GIPC1 is associated with oculopharyngodistal myopathy

J Deng, J Yu, P Li, X Luan, L Cao, J Zhao, M Yu… - The American Journal of …, 2020 - cell.com
Oculopharyngodistal myopathy (OPDM) is an adult-onset inherited neuromuscular disorder
characterized by progressive ptosis, external ophthalmoplegia, and weakness of the …

Dietary polystyrene nanoplastics exposure alters hepatic glycolipid metabolism, triggering inflammatory responses and apoptosis in Monopterus albus

C Zhu, W Zhou, M Han, Y Yang, Y Li, Q Jiang… - Science of The Total …, 2023 - Elsevier
Microplastics and nanoplastics (MPs and NPs) are abundant, persistent, and widespread
environmental pollutants that are of increasing concern as they pose a serious threat to …

Neutrophils promote CXCR3-dependent itch in the development of atopic dermatitis

CM Walsh, RZ Hill, J Schwendinger-Schreck… - Elife, 2019 - elifesciences.org
Chronic itch remains a highly prevalent disorder with limited treatment options. Most chronic
itch diseases are thought to be driven by both the nervous and immune systems, but the …

Single‐base methylome analysis reveals dynamic epigenomic differences associated with water deficit in apple

J Xu, S Zhou, X Gong, Y Song… - Plant biotechnology …, 2018 - Wiley Online Library
Cytosine methylation is an essential feature of epigenetic regulation and is involved in
various biological processes. Although cytosine methylation has been analysed at the …

bayNorm: Bayesian gene expression recovery, imputation and normalization for single-cell RNA-sequencing data

W Tang, F Bertaux, P Thomas, C Stefanelli… - …, 2020 - academic.oup.com
Motivation Normalization of single-cell RNA-sequencing (scRNA-seq) data is a prerequisite
to their interpretation. The marked technical variability, high amounts of missing …