Incongruence in the phylogenomics era
Genome-scale data and the development of novel statistical phylogenetic approaches have
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
greatly aided the reconstruction of a broad sketch of the tree of life and resolved many of its …
A review of long‐branch attraction
J Bergsten - Cladistics, 2005 - Wiley Online Library
The history of long‐branch attraction, and in particular methods suggested to detect and
avoid the artifact to date, is reviewed. Methods suggested to avoid LBA‐artifacts include …
avoid the artifact to date, is reviewed. Methods suggested to avoid LBA‐artifacts include …
PhyloPhlAn is a new method for improved phylogenetic and taxonomic placement of microbes
New microbial genomes are constantly being sequenced, and it is crucial to accurately
determine their taxonomic identities and evolutionary relationships. Here we report …
determine their taxonomic identities and evolutionary relationships. Here we report …
Why do phylogenomic data sets yield conflicting trees? Data type influences the avian tree of life more than taxon sampling
Phylogenomics, the use of large-scale data matrices in phylogenetic analyses, has been
viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life …
viewed as the ultimate solution to the problem of resolving difficult nodes in the tree of life …
[LIBRO][B] Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion
DJ Zwickl - 2006 - search.proquest.com
Phylogenetic trees have a multitude of applications in biology, epidemiology, conservation
and even forensics. However, the inference of phylogenetic trees can be extremely …
and even forensics. However, the inference of phylogenetic trees can be extremely …
Resolution of the early placental mammal radiation using Bayesian phylogenetics
Molecular phylogenetic studies have resolved placental mammals into four major groups,
but have not established the full hierarchy of interordinal relationships, including the position …
but have not established the full hierarchy of interordinal relationships, including the position …
[PDF][PDF] An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II
APG Ii - Botanical journal of the Linnean Society, 2003 - plantnetwork.org
During the 1990s, reconstruction of flowering plant phylogeny took a great step forward.
Rapidly accumulating DNA sequences, in particular from the plastid gene rbcL (eg Chase et …
Rapidly accumulating DNA sequences, in particular from the plastid gene rbcL (eg Chase et …
Genome-scale approaches to resolving incongruence in molecular phylogenies
One of the most pervasive challenges in molecular phylogenetics is the incongruence
between phylogenies obtained using different data sets, such as individual genes. To …
between phylogenies obtained using different data sets, such as individual genes. To …
Phylogeny, adaptive radiation, and historical biogeography in Bromeliaceae: insights from an eight‐locus plastid phylogeny
• Premise: Bromeliaceae form a large, ecologically diverse family of angiosperms native to
the New World. We use a bromeliad phylogeny based on eight plastid regions to analyze …
the New World. We use a bromeliad phylogeny based on eight plastid regions to analyze …
Epstein-Barr virus and cancer
MP Thompson, R Kurzrock - Clinical cancer research, 2004 - AACR
EBV was the first human virus to be directly implicated in carcinogenesis. It infects> 90% of
the world's population. Although most humans coexist with the virus without serious …
the world's population. Although most humans coexist with the virus without serious …