Museum of spatial transcriptomics

L Moses, L Pachter - Nature methods, 2022 - nature.com
The function of many biological systems, such as embryos, liver lobules, intestinal villi, and
tumors, depends on the spatial organization of their cells. In the past decade, high …

Spatial components of molecular tissue biology

G Palla, DS Fischer, A Regev, FJ Theis - Nature Biotechnology, 2022 - nature.com
Methods for profiling RNA and protein expression in a spatially resolved manner are rapidly
evolving, making it possible to comprehensively characterize cells and tissues in health and …

Cell2location maps fine-grained cell types in spatial transcriptomics

V Kleshchevnikov, A Shmatko, E Dann… - Nature …, 2022 - nature.com
Spatial transcriptomic technologies promise to resolve cellular wiring diagrams of tissues in
health and disease, but comprehensive map** of cell types in situ remains a challenge …

Inflammation in multiple sclerosis: Consequences for remyelination and disease progression

L Klotz, J Antel, T Kuhlmann - Nature Reviews Neurology, 2023 - nature.com
Despite the large number of immunomodulatory or immunosuppressive treatments available
to treat relapsing–remitting multiple sclerosis (MS), treatment of the progressive phase of the …

Spatial transcriptomics technology in cancer research

Q Yu, M Jiang, L Wu - Frontiers in Oncology, 2022 - frontiersin.org
In recent years, spatial transcriptomics (ST) technologies have developed rapidly and have
been widely used in constructing spatial tissue atlases and characterizing spatiotemporal …

A review of spatial profiling technologies for characterizing the tumor microenvironment in immuno-oncology

B Hu, M Sajid, R Lv, L Liu, C Sun - Frontiers in Immunology, 2022 - frontiersin.org
Interpreting the mechanisms and principles that govern gene activity and how these genes
work according to-their cellular distribution in organisms has profound implications for …

Decoding microRNAs in autism spectrum disorder

J Li, X Xu, J Liu, S Zhang, X Tan, Z Li, J Zhang… - … Therapy-Nucleic Acids, 2022 - cell.com
Autism spectrum disorder (ASD)—a congenital mental disorder accompanied by social
dysfunction and stereotyped behaviors—has attracted a great deal of attention worldwide. A …

[HTML][HTML] Olfactory neuroblastoma mimics molecular heterogeneity and lineage trajectories of small-cell lung cancer

JB Finlay, AS Ireland, SB Hawgood, T Reyes, T Ko… - Cancer Cell, 2024 - cell.com
The olfactory epithelium undergoes neuronal regeneration from basal stem cells and is
susceptible to olfactory neuroblastoma (ONB), a rare tumor of unclear origins. Employing …

The Emerging Roles of LIS 1 Biomechanics in Cellular and Cortical Homeostasis

A Kshirsagarand, O Reiner - Neocortical Neurogenesis in …, 2023 - Wiley Online Library
LIS1 (LISSENCEPHALY‐1, also known as PAFAH1B1) is the first gene identified and
reported to be involved in neuronal migration. Multiple studies have demonstrated that LIS1 …

An experimental comparison of the Digital Spatial Profiling and Visium spatial transcriptomics technologies for cancer research

T Wang, K Harvey, J Reeves, DL Roden, N Bartonicek… - bioRxiv, 2023 - biorxiv.org
Background Spatial transcriptomic technologies are powerful tools for resolving the spatial
heterogeneity of gene expression in tissue samples. However, little evidence exists on …