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Agents in bioinformatics, computational and systems biology
The adoption of agent technologies and multi-agent systems constitutes an emerging area
in bioinformatics. In this article, we report on the activity of the Working Group on Agents in …
in bioinformatics. In this article, we report on the activity of the Working Group on Agents in …
Fast, accurate static analysis for fixed-point finite-precision effects in DSP designs
Translating digital signal processing (DSP) software into its finite-precision hardware
implementation is often a time-consuming task. We describe a new static analysis technique …
implementation is often a time-consuming task. We describe a new static analysis technique …
Biowep: a workflow enactment portal for bioinformatics applications
Background The huge amount of biological information, its distribution over the Internet and
the heterogeneity of available software tools makes the adoption of new data integration and …
the heterogeneity of available software tools makes the adoption of new data integration and …
BioWMS: a web-based Workflow Management System for bioinformatics
Background An in-silico experiment can be naturally specified as a workflow of activities
implementing, in a standardized environment, the process of data and control analysis. A …
implementing, in a standardized environment, the process of data and control analysis. A …
Visualising 2-simplex formation in metabolic reactions
Understanding in silico the dynamics of metabolic reactions made by a large number of
molecules has led to the development of different tools for visualising molecular interactions …
molecules has led to the development of different tools for visualising molecular interactions …
An agent-oriented conceptual framework for systems biology
Recently, a collective effort from multiple research areas has been made to understand
biological systems at the system level. On the one hand, for instance, researchers working …
biological systems at the system level. On the one hand, for instance, researchers working …
[PDF][PDF] Shape Calculus. A Spatial Mobile Calculus for 3D Shapes.
We present a bio-inspired calculus for describing 3D shapes moving in a space. A shape
forms a 3D process when combined with a behaviour. Behaviours are specified with a timed …
forms a 3D process when combined with a behaviour. Behaviours are specified with a timed …
An agent-based multilayer architecture for bioinformatics grids
Due to the huge volume and complexity of biological data available today, a fundamental
component of biomedical research is now in silico analysis. This includes modelling and …
component of biomedical research is now in silico analysis. This includes modelling and …
BioShape: a spatial shape-based scale-independent simulation environment for biological systems
The simulation and visualization of biological system models is becoming more and more
important both in clinical use and in basic research. Since many systems are characterized …
important both in clinical use and in basic research. Since many systems are characterized …
MAFODKM: Mobile application framework for the management of omics data and knowledge mining
There are many infectious diseases still plaguing different nations of the world. Some of
these infectious diseases such as HIV, malaria, Ebola, and Lassa fever tend to affect less …
these infectious diseases such as HIV, malaria, Ebola, and Lassa fever tend to affect less …