Agents in bioinformatics, computational and systems biology

E Merelli, G Armano, N Cannata… - Briefings in …, 2007 - academic.oup.com
The adoption of agent technologies and multi-agent systems constitutes an emerging area
in bioinformatics. In this article, we report on the activity of the Working Group on Agents in …

Fast, accurate static analysis for fixed-point finite-precision effects in DSP designs

CF Fang, RA Rutenbar, T Chen - ICCAD-2003. International …, 2003 - ieeexplore.ieee.org
Translating digital signal processing (DSP) software into its finite-precision hardware
implementation is often a time-consuming task. We describe a new static analysis technique …

Biowep: a workflow enactment portal for bioinformatics applications

P Romano, E Bartocci, G Bertolini, F De Paoli… - BMC …, 2007 - Springer
Background The huge amount of biological information, its distribution over the Internet and
the heterogeneity of available software tools makes the adoption of new data integration and …

BioWMS: a web-based Workflow Management System for bioinformatics

E Bartocci, F Corradini, E Merelli, L Scortichini - BMC bioinformatics, 2007 - Springer
Background An in-silico experiment can be naturally specified as a workflow of activities
implementing, in a standardized environment, the process of data and control analysis. A …

Visualising 2-simplex formation in metabolic reactions

M Piangerelli, S Maestri, E Merelli - Journal of Molecular Graphics and …, 2020 - Elsevier
Understanding in silico the dynamics of metabolic reactions made by a large number of
molecules has led to the development of different tools for visualising molecular interactions …

An agent-oriented conceptual framework for systems biology

N Cannata, F Corradini, E Merelli, A Omicini… - … systems biology III, 2005 - Springer
Recently, a collective effort from multiple research areas has been made to understand
biological systems at the system level. On the one hand, for instance, researchers working …

[PDF][PDF] Shape Calculus. A Spatial Mobile Calculus for 3D Shapes.

E Bartocci, F Corradini… - Scientific Annals of …, 2010 - publications.info.uaic.ro
We present a bio-inspired calculus for describing 3D shapes moving in a space. A shape
forms a 3D process when combined with a behaviour. Behaviours are specified with a timed …

An agent-based multilayer architecture for bioinformatics grids

E Bartocci, D Cacciagrano, N Cannata… - IEEE transactions on …, 2007 - ieeexplore.ieee.org
Due to the huge volume and complexity of biological data available today, a fundamental
component of biomedical research is now in silico analysis. This includes modelling and …

BioShape: a spatial shape-based scale-independent simulation environment for biological systems

F Buti, D Cacciagrano, F Corradini, E Merelli… - Procedia Computer …, 2010 - Elsevier
The simulation and visualization of biological system models is becoming more and more
important both in clinical use and in basic research. Since many systems are characterized …

MAFODKM: Mobile application framework for the management of omics data and knowledge mining

O Oluwagbemi, S Misra, M Leon - Journal of Physics …, 2020 - iopscience.iop.org
There are many infectious diseases still plaguing different nations of the world. Some of
these infectious diseases such as HIV, malaria, Ebola, and Lassa fever tend to affect less …