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From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems
Microorganisms and the viruses that infect them are the most numerous biological entities
on Earth and enclose its greatest biodiversity and genetic reservoir. With strength in their …
on Earth and enclose its greatest biodiversity and genetic reservoir. With strength in their …
Big answers from small worlds: a user's guide for protist microcosms as a model system in ecology and evolution
Laboratory microcosm experiments using protists as model organisms have a long tradition
and are widely used to investigate general concepts in population biology, community …
and are widely used to investigate general concepts in population biology, community …
metaxa2: improved identification and taxonomic classification of small and large subunit rRNA in metagenomic data
The ribosomal rRNA genes are widely used as genetic markers for taxonomic identification
of microbes. Particularly the small subunit (SSU; 16S/18S) rRNA gene is frequently used for …
of microbes. Particularly the small subunit (SSU; 16S/18S) rRNA gene is frequently used for …
Metagenomic 16S rDNA I llumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities
Sequencing of 16S rDNA polymerase chain reaction (PCR) amplicons is the most common
approach for investigating environmental prokaryotic diversity, despite the known biases …
approach for investigating environmental prokaryotic diversity, despite the known biases …
The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental …
General studies on benthic microbial communities focus on fundamental biogeochemical
processes or the most abundant constituents. Thereby, minor fractions such as the …
processes or the most abundant constituents. Thereby, minor fractions such as the …
Metagenomics uncovers a new group of low GC and ultra-small marine Actinobacteria
We describe a deep-branching lineage of marine Actinobacteria with very low GC content
(33%) and the smallest free living cells described yet (cell volume ca. 0.013 μm3), even …
(33%) and the smallest free living cells described yet (cell volume ca. 0.013 μm3), even …
Key roles for freshwater A ctinobacteria revealed by deep metagenomic sequencing
Freshwater ecosystems are critical but fragile environments directly affecting society and its
welfare. However, our understanding of genuinely freshwater microbial communities …
welfare. However, our understanding of genuinely freshwater microbial communities …
Taxonomic profiling and functional gene annotation of microbial communities in sediment of river Ganga at Kanpur, India: insights from whole-genome metagenomics …
The perennial river Ganga is recognized as one of India's largest rivers of India, but due to
continuous anthropogenic activities, the river's ecosystem is under threat. Next-generation …
continuous anthropogenic activities, the river's ecosystem is under threat. Next-generation …
Cultivation and genomics of the first freshwater SAR11 (LD12) isolate
Evolutionary transitions between fresh and salt water happen infrequently among
bacterioplankton. Within the ubiquitous and highly abundant heterotrophic …
bacterioplankton. Within the ubiquitous and highly abundant heterotrophic …
Occurrence and biodegradation of hydrocarbons at high salinities
Hypersaline environments are found around the world, above and below ground, and many
are exposed to hydrocarbons on a continuous or a frequent basis. Some surface …
are exposed to hydrocarbons on a continuous or a frequent basis. Some surface …