Predictions of the ADMET properties of candidate drug molecules utilizing different QSAR/QSPR modelling approaches

M Tareq Hassan Khan - Current drug metabolism, 2010 - ingentaconnect.com
The integration of early ADMET (absorption, distribution, metabolism, excretion and toxicity)
profiling, or simply prediction, of'lead'molecules to speed-up the'lead'selection further for …

iLoc-Euk: a multi-label classifier for predicting the subcellular localization of singleplex and multiplex eukaryotic proteins

KC Chou, ZC Wu, X **ao - PloS one, 2011 - journals.plos.org
Predicting protein subcellular localization is an important and difficult problem, particularly
when query proteins may have the multiplex character, ie, simultaneously exist at, or move …

Predicting drugs and proteins in parasite infections with topological indices of complex networks: theoretical backgrounds, applications and legal issues

H Gonzalez-Diaz, F Romaris… - Current …, 2010 - ingentaconnect.com
Quantitative Structure-Activity Relationship (QSAR) models have been used in
Pharmaceutical design and Medicinal Chemistry for the discovery of anti-parasite drugs …

2D-MH: A web-server for generating graphic representation of protein sequences based on the physicochemical properties of their constituent amino acids

ZC Wu, X **ao, KC Chou - Journal of theoretical biology, 2010 - Elsevier
Introduction of graphic representation for biological sequences can provide intuitive overall
pictures as well as useful insights for performing large-scale analysis. Here, a new two …

Biomacromolecular quantitative structure–activity relationship (BioQSAR): a proof-of-concept study on the modeling, prediction and interpretation of protein–protein …

P Zhou, C Wang, F Tian, Y Ren, C Yang… - Journal of computer-aided …, 2013 - Springer
Quantitative structure–activity relationship (QSAR), a regression modeling methodology that
establishes statistical correlation between structure feature and apparent behavior for a …

PTML combinatorial model of ChEMBL compounds assays for multiple types of cancer

H Bediaga, S Arrasate… - ACS Combinatorial …, 2018 - ACS Publications
Determining the target proteins of new anticancer compounds is a very important task in
Medicinal Chemistry. In this sense, chemists carry out preclinical assays with a high number …

PTML Model for Proteome Mining of B-Cell Epitopes and Theoretical–Experimental Study of Bm86 Protein Sequences from Colima, Mexico

SG Martinez-Arzate, E Tenorio-Borroto… - Journal of proteome …, 2017 - ACS Publications
In this work, we developed a general perturbation theory and machine learning method for
data mining of proteomes to discover new B-cell epitopes useful for vaccine design. The …

MIND-BEST: Web Server for Drugs and Target Discovery; Design, Synthesis, and Assay of MAO-B Inhibitors and Theoretical− Experimental Study of G3PDH Protein …

H González-Díaz, F Prado-Prado… - Journal of proteome …, 2011 - ACS Publications
Many drugs with very different affinity to a large number of receptors are described. Thus, in
this work, we selected drug− target pairs (DTPs/nDTPs) of drugs with high affinity/nonaffinity …

Multioutput perturbation-theory machine learning (PTML) model of ChEMBL data for antiretroviral compounds

E Vásquez-Domínguez… - Molecular …, 2019 - ACS Publications
Retroviral infections, such as HIV, are, until now, diseases with no cure. Medicine and
pharmaceutical chemistry need and consider it a huge goal to define target proteins of new …

Perturbation Theory/Machine Learning Model of ChEMBL Data for Dopamine Targets: Docking, Synthesis, and Assay of New l-Prolyl-l-leucyl-glycinamide …

J Ferreira da Costa, D Silva, O Caamaño… - ACS Chemical …, 2018 - ACS Publications
Predicting drug–protein interactions (DPIs) for target proteins involved in dopamine
pathways is a very important goal in medicinal chemistry. We can tackle this problem using …