Drug combinations: a strategy to extend the life of antibiotics in the 21st century

M Tyers, GD Wright - Nature Reviews Microbiology, 2019 - nature.com
Antimicrobial resistance threatens a resurgence of life-threatening bacterial infections and
the potential demise of many aspects of modern medicine. Despite intensive drug discovery …

Machine learning for antimicrobial resistance prediction: current practice, limitations, and clinical perspective

JI Kim, F Maguire, KK Tsang, T Gouliouris… - Clinical microbiology …, 2022 - Am Soc Microbiol
Antimicrobial resistance (AMR) is a global health crisis that poses a great threat to modern
medicine. Effective prevention strategies are urgently required to slow the emergence and …

Construction and analysis of two genome-scale deletion libraries for Bacillus subtilis

BM Koo, G Kritikos, JD Farelli, H Todor, K Tong… - Cell systems, 2017 - cell.com
A systems-level understanding of Gram-positive bacteria is important from both an
environmental and health perspective and is most easily obtained when high-quality …

Map** the genetic landscape of human cells

MA Horlbeck, A Xu, M Wang, NK Bennett, CY Park… - Cell, 2018 - cell.com
Seminal yeast studies have established the value of comprehensively map** genetic
interactions (GIs) for inferring gene function. Efforts in human cells using focused gene sets …

Chemogenetic interrogation of a brain-wide fear memory network in mice

G Vetere, JW Kenney, LM Tran, F **a, PE Steadman… - Neuron, 2017 - cell.com
Behavior depends on coordinated activity across multiple brain regions. Within such
networks, highly connected hub regions are assumed to disproportionately influence …

The binary protein-protein interaction landscape of Escherichia coli

SV Rajagopala, P Sikorski, A Kumar, R Mosca… - Nature …, 2014 - nature.com
Efforts to map the Escherichia coli interactome have identified several hundred
macromolecular complexes, but direct binary protein-protein interactions (PPIs) have not …

The oxidative stress network of Mycobacterium tuberculosis reveals coordination between radical detoxification systems

S Nambi, JE Long, BB Mishra, R Baker, KC Murphy… - Cell host & …, 2015 - cell.com
M. tuberculosis (Mtb) survives a hostile environment within the host that is shaped in part by
oxidative stress. The mechanisms used by Mtb to resist these stresses remain ill-defined …

Global landscape of cell envelope protein complexes in Escherichia coli

M Babu, C Bundalovic-Torma, C Calmettes… - Nature …, 2018 - nature.com
Bacterial cell envelope protein (CEP) complexes mediate a range of processes, including
membrane assembly, antibiotic resistance and metabolic coordination. However, only …

Epistasis and the evolution of antimicrobial resistance

A Wong - Frontiers in Microbiology, 2017 - frontiersin.org
The fitness effects of a mutation can depend, sometimes dramatically, on genetic
background; this phenomenon is often referred to as “epistasis.” Epistasis can have …

CRISPR-based genomic tools for the manipulation of genetically intractable microorganisms

RS Shapiro, A Chavez, JJ Collins - Nature Reviews Microbiology, 2018 - nature.com
Genetic manipulation of microorganisms has been crucial in understanding their biology, yet
for many microbial species, robust tools for comprehensive genetic analysis were lacking …