Not just for programmers: How GitHub can accelerate collaborative and reproducible research in ecology and evolution

PHP Braga, K Hébert, EJ Hudgins… - Methods in Ecology …, 2023 - Wiley Online Library
Researchers in ecology and evolutionary biology are increasingly dependent on
computational code to conduct research. Hence, the use of efficient methods to share …

Develo** an automated iterative near‐term forecasting system for an ecological study

EP White, GM Yenni, SD Taylor… - Methods in Ecology …, 2019 - Wiley Online Library
Most forecasts for the future state of ecological systems are conducted once and never
updated or assessed. As a result, many available ecological forecasts are not based on the …

Develo** a modern data workflow for regularly updated data

GM Yenni, EM Christensen, EK Bledsoe, SR Supp… - PLoS …, 2019 - journals.plos.org
Over the past decade, biology has undergone a data revolution in how researchers collect
data and the amount of data being collected. An emerging challenge that has received …

[HTML][HTML] Modelling nonlinear responses of a desert rodent species to environmental change with hierarchical dynamic generalized additive models

K Karunarathna, K Wells, NJ Clark - Ecological Modelling, 2024 - Elsevier
Modelling abundance fluctuations of species is a crucial first step for understanding and
forecasting system dynamics under future conditions. But, especially in multivariate …

Maintenance of community function through compensation breaks down over time in a desert rodent community

RM Diaz, SKM Ernest - 2022 - Wiley Online Library
Understanding the ecological processes that maintain community function in systems
experiencing species loss, and how these processes change over time, is key to …

Transferability of ecological forecasting models to novel biotic conditions in a long‐term experimental study

PKT Dumandan, JL Simonis, GM Yenni, SKM Ernest… - Ecology, 2024 - Wiley Online Library
Ecological forecasting models play an increasingly important role for managing natural
resources and assessing our fundamental knowledge of processes driving ecological …

Temporal changes in species composition affect a ubiquitous species' use of habitat patches

EK Bledsoe, SKM Ernest - 2019 - Wiley Online Library
Across landscapes, shifts in species composition often co‐occur with shifts in structural or
abiotic habitat features, making it difficult to disentangle the role of competitors and …

Established rodent community delays recovery of dominant competitor following experimental disturbance

EM Christensen, GL Simpson… - Proceedings of the …, 2019 - royalsocietypublishing.org
Human activities alter processes that control local biodiversity, causing changes in the
abundance and identity of species in ecosystems. However, restoring biodiversity to a …

Develo** a modern data workflow for evolving data

GM Yenni, EM Christensen, EK Bledsoe, SR Supp… - bioRxiv, 2018 - biorxiv.org
Data management and publication are core components of the research process. An
emerging challenge that has received limited attention in biology is managing, working with …

[PDF][PDF] portalr: an R package for summarizing and using the Portal Project Data

EM Christensen, GM Yenni, H Ye… - Journal of Open …, 2019 - joss.theoj.org
Data sharing, the practice of making data widely available for use by others, benefits the
ecological research community in ensuring study reproducibility and enabling many data …