[HTML][HTML] Gut reactions: breaking down xenobiotic–microbiome interactions

G Clarke, KV Sandhu, BT Griffin, TG Dinan… - Pharmacological …, 2019 - Elsevier
The microbiome plays a key role in health and disease, and there has been considerable
interest in therapeutic targeting of the microbiome as well as mining this rich resource in …

Host–pathogen checkpoints and population bottlenecks in persistent and intracellular uropathogenic Escherichia coli bladder infection

TJ Hannan, M Totsika, KJ Mansfield… - FEMS microbiology …, 2012 - academic.oup.com
Bladder infections affect millions of people yearly, and recurrent symptomatic infections
(cystitis) are very common. The rapid increase in infections caused by multidrug-resistant …

Tunable thermal bioswitches for in vivo control of microbial therapeutics

DI Piraner, MH Abedi, BA Moser… - Nature chemical …, 2017 - nature.com
Temperature is a unique input signal that could be used by engineered microbial
therapeutics to sense and respond to host conditions or spatially targeted external triggers …

Carbohydrate metabolism in Archaea: current insights into unusual enzymes and pathways and their regulation

C Bräsen, D Esser, B Rauch… - … and Molecular Biology …, 2014 - journals.asm.org
The metabolism of Archaea, the third domain of life, resembles in its complexity those of
Bacteria and lower Eukarya. However, this metabolic complexity in Archaea is accompanied …

Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world

EV Koonin, YI Wolf - Nucleic acids research, 2008 - academic.oup.com
The first bacterial genome was sequenced in 1995, and the first archaeal genome in 1996.
Soon after these breakthroughs, an exponential rate of genome sequencing was …

Advances in promoter engineering: novel applications and predefined transcriptional control

AP Cazier, J Blazeck - Biotechnology Journal, 2021 - Wiley Online Library
Synthetic biology continues to progress by relying on more robust tools for transcriptional
control, of which promoters are the most fundamental component. Numerous studies have …

DNA supercoiling is a fundamental regulatory principle in the control of bacterial gene expression

CJ Dorman, MJ Dorman - Biophysical reviews, 2016 - Springer
Although it has become routine to consider DNA in terms of its role as a carrier of genetic
information, it is also an important contributor to the control of gene expression. This …

Allostery: absence of a change in shape does not imply that allostery is not at play

CJ Tsai, A Del Sol, R Nussinov - Journal of molecular biology, 2008 - Elsevier
Allostery is essential for controlled catalysis, signal transmission, receptor trafficking, turning
genes on and off, and apoptosis. It governs the organism's response to environmental and …

Evolution of genome architecture

EV Koonin - The international journal of biochemistry & cell biology, 2009 - Elsevier
Charles Darwin believed that all traits of organisms have been honed to near perfection by
natural selection. The empirical basis underlying Darwin's conclusions consisted of …

Sampling the cell with anomalous diffusion—the discovery of slowness

G Guigas, M Weiss - Biophysical journal, 2008 - cell.com
Diffusion-mediated searching for interaction partners is an ubiquitous process in cell
biology. Transcription factors, for example, search specific DNA sequences, signaling …