[HTML][HTML] Order-preserving matching
We introduce a new string matching problem called order-preserving matching on numeric
strings, where a pattern matches a text if the text contains a substring of values whose …
strings, where a pattern matches a text if the text contains a substring of values whose …
Absent sequences: nullomers and primes
G Hampikian, T Andersen - Biocomputing 2007, 2007 - World Scientific
We describe a new publicly available algorithm for identifying absent sequences, and
demonstrate its use by listing the smallest oligomers not found in the human genome …
demonstrate its use by listing the smallest oligomers not found in the human genome …
Isometric words based on swap and mismatch distance
An edit distance is a metric between words that quantifies how two words differ by counting
the number of edit operations needed to transform one word into the other one. A word f is …
the number of edit operations needed to transform one word into the other one. A word f is …
The k-mismatch problem revisited
We revisit the complexity of one of the most basic problems in pattern matching. In the k-
mismatch problem we must compute the Hamming distance between a pattern of length m …
mismatch problem we must compute the Hamming distance between a pattern of length m …
[HTML][HTML] Finding patterns and periods in cartesian tree matching
SG Park, M Bataa, A Amir, GM Landau… - Theoretical Computer …, 2020 - Elsevier
We introduce a new metric of match, called Cartesian tree matching, which means that two
strings match if they have the same Cartesian trees. Based on Cartesian tree matching, we …
strings match if they have the same Cartesian trees. Based on Cartesian tree matching, we …
[HTML][HTML] Average-optimal string matching
K Fredriksson, S Grabowski - Journal of Discrete Algorithms, 2009 - Elsevier
The exact string matching problem is to find the occurrences of a pattern of length m from a
text of length n symbols. We develop a novel and unorthodox filtering technique for this …
text of length n symbols. We develop a novel and unorthodox filtering technique for this …