HLA imputation and its application to genetic and molecular fine-map** of the MHC region in autoimmune diseases

T Naito, Y Okada - Seminars in Immunopathology, 2022 - Springer
Variations of human leukocyte antigen (HLA) genes in the major histocompatibility complex
region (MHC) significantly affect the risk of various diseases, especially autoimmune …

Genomic landscape of cancer in racially and ethnically diverse populations

CE Thomas, U Peters - Nature Reviews Genetics, 2024 - nature.com
Cancer incidence and mortality rates can vary widely among different racial and ethnic
groups, attributed to a complex interplay of genetic, environmental and social factors …

A comparison of genoty** arrays

JAM Verlouw, E Clemens, JH de Vries, O Zolk… - European Journal of …, 2021 - nature.com
Array technology to genotype single-nucleotide variants (SNVs) is widely used in genome-
wide association studies (GWAS), clinical diagnostics, and linkage studies. Arrays have …

Genetic determinants of risk in pulmonary arterial hypertension: international genome-wide association studies and meta-analysis

CJ Rhodes, K Batai, M Bleda, M Haimel… - The Lancet …, 2019 - thelancet.com
Background Rare genetic variants cause pulmonary arterial hypertension, but the
contribution of common genetic variation to disease risk and natural history is poorly …

Rapid genotype imputation from sequence with reference panels

RW Davies, M Kucka, D Su, S Shi, M Flanagan… - Nature …, 2021 - nature.com
Inexpensive genoty** methods are essential to modern genomics. Here we present
QUILT, which performs diploid genotype imputation using low-coverage whole-genome …

HLA-A* 32: 01 is strongly associated with vancomycin-induced drug reaction with eosinophilia and systemic symptoms

KC Konvinse, JA Trubiano, R Pavlos, I James… - Journal of allergy and …, 2019 - Elsevier
Background Vancomycin is a prevalent cause of the severe hypersensitivity syndrome drug
reaction with eosinophilia and systemic symptoms (DRESS), which leads to significant …

A deep learning method for HLA imputation and trans-ethnic MHC fine-map** of type 1 diabetes

T Naito, K Suzuki, J Hirata, Y Kamatani… - Nature …, 2021 - nature.com
Conventional human leukocyte antigen (HLA) imputation methods drop their performance
for infrequent alleles, which is one of the factors that reduce the reliability of trans-ethnic …

Contribution of non-HLA incompatibility between donor and recipient to kidney allograft survival: genome-wide analysis in a prospective cohort

R Reindl-Schwaighofer, A Heinzel, A Kainz… - The Lancet, 2019 - thelancet.com
Background The introduction of HLA matching of donors and recipients was a breakthrough
in kidney transplantation. However, half of all transplanted kidneys still fail within 15 years …

Accurate imputation of human leukocyte antigens with CookHLA

S Cook, W Choi, H Lim, Y Luo, K Kim, X Jia… - Nature …, 2021 - nature.com
The recent development of imputation methods enabled the prediction of human leukocyte
antigen (HLA) alleles from intergenic SNP data, allowing studies to fine-map HLA for …

Phenome-wide scanning identifies multiple diseases and disease severity phenotypes associated with HLA variants

JH Karnes, L Bastarache, CM Shaffer… - Science translational …, 2017 - science.org
Although many phenotypes have been associated with variants in human leukocyte antigen
(HLA) genes, the full phenotypic impact of HLA variants across all diseases is unknown. We …