[HTML][HTML] Neural network-based approaches for biomedical relation classification: a review

Y Zhang, H Lin, Z Yang, J Wang, Y Sun, B Xu… - Journal of biomedical …, 2019 - Elsevier
The explosive growth of biomedical literature has created a rich source of knowledge, such
as that on protein-protein interactions (PPIs) and drug-drug interactions (DDIs), locked in …

BioWordVec, improving biomedical word embeddings with subword information and MeSH

Y Zhang, Q Chen, Z Yang, H Lin, Z Lu - Scientific data, 2019 - nature.com
Distributed word representations have become an essential foundation for biomedical
natural language processing (BioNLP), text mining and information retrieval. Word …

Biomedical relation extraction: from binary to complex

D Zhou, D Zhong, Y He - Computational and mathematical …, 2014 - Wiley Online Library
Biomedical relation extraction aims to uncover high‐quality relations from life science
literature with high accuracy and efficiency. Early biomedical relation extraction tasks …

[PDF][PDF] Semeval-2013 task 9: Extraction of drug-drug interactions from biomedical texts (ddiextraction 2013)

I Segura-Bedmar, P Martínez… - … Joint Conference on …, 2013 - aclanthology.org
The DDIExtraction 2013 task concerns the recognition of drugs and extraction of drugdrug
interactions that appear in biomedical literature. We propose two subtasks for the …

[HTML][HTML] The DDI corpus: An annotated corpus with pharmacological substances and drug–drug interactions

M Herrero-Zazo, I Segura-Bedmar, P Martínez… - Journal of biomedical …, 2013 - Elsevier
The management of drug–drug interactions (DDIs) is a critical issue resulting from the
overwhelming amount of information available on them. Natural Language Processing …

[HTML][HTML] A hybrid model based on neural networks for biomedical relation extraction

Y Zhang, H Lin, Z Yang, J Wang, S Zhang, Y Sun… - Journal of biomedical …, 2018 - Elsevier
Biomedical relation extraction can automatically extract high-quality biomedical relations
from biomedical texts, which is a vital step for the mining of biomedical knowledge hidden in …

All-paths graph kernel for protein-protein interaction extraction with evaluation of cross-corpus learning

A Airola, S Pyysalo, J Björne, T Pahikkala, F Ginter… - BMC …, 2008 - Springer
Background Automated extraction of protein-protein interactions (PPI) is an important and
widely studied task in biomedical text mining. We propose a graph kernel based approach …

[HTML][HTML] BioC: a minimalist approach to interoperability for biomedical text processing

DC Comeau, R Islamaj Doğan, P Ciccarese… - Database, 2013 - academic.oup.com
A vast amount of scientific information is encoded in natural language text, and the quantity
of such text has become so great that it is no longer economically feasible to have a human …

[HTML][HTML] PKDE4J: Entity and relation extraction for public knowledge discovery

M Song, WC Kim, D Lee, GE Heo, KY Kang - Journal of biomedical …, 2015 - Elsevier
Due to an enormous number of scientific publications that cannot be handled manually,
there is a rising interest in text-mining techniques for automated information extraction …

Deep learning for extracting protein-protein interactions from biomedical literature

Y Peng, Z Lu - arxiv preprint arxiv:1706.01556, 2017 - arxiv.org
State-of-the-art methods for protein-protein interaction (PPI) extraction are primarily feature-
based or kernel-based by leveraging lexical and syntactic information. But how to …